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[177489_at]

Description C05E7.2 /REP_DB=WormBase Gene ID /WP=CE02976 /TR=Q17670 /GB=CAA91787.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 49      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1548
1 2 3 4 range
A 11.7
(-3)
A 		1017.1
(2)
P 		1227.4
(3)
P 		116.6
(-2.5)
A 		1216
B 7.5
(-3)
A 		1288.9
(2)
P 		1555.2
(3)
P 		11.3
(-3)
A 		1548
C 34.2
(-3)
A 		1180.7
(2.1)
P 		1394.5
(3)
P 		59.6
(-2.9)
A 		1360
avr 17.8
(-3) 		1162.2
(2) 		1392.4
(3) 		62.5
(-2.8) 		1375

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3039
1 2 3 4 5 6 range
A 117.4
(-3)
A 		517.6
(-2.1)
P 		529.6
(-2)
P 		1956.1
(1.4)
P 		2653.2
(3)
P 		516.5
(-2.1)
P 		2536
B 111.8
(-3)
A 		586.9
(-2)
P 		390.7
(-2.4)
P 		1567.7
(-0)
P 		3072.4
(3)
P 		685.4
(-1.8)
P 		2961
C 33.7
(-3)
A 		590.9
(-1.8)
P 		396.1
(-2.2)
P 		1434.4
(-0)
P 		2837.4
(3)
P 		705.3
(-1.6)
P 		2804
avr 87.6
(-3) 		565.1
(-2) 		438.8
(-2.2) 		1652.7
(0.4) 		2854.3
(3) 		635.7
(-1.8) 		2767
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 484
1 2 3 4 range
A 4.3
(-3)
A 		220.8
(1.1)
P 		320.9
(3)
P 		17.1
(-2.8)
A 		317
B 2.4
(-3)
A 		318.3
(2.3)
P 		360.4
(3)
P 		2.4
(-3)
A 		358
C 11.3
(-3)
A 		339.5
(1.2)
P 		486
(3)
P 		10.1
(-3)
A 		476
avr 6
(-3) 		292.9
(1.5) 		389.1
(3) 		9.9
(-2.9) 		383

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1236
1 2 3 4 5 6 range
A 21.6
(-3)
A 		184.1
(-1.7)
P 		115.3
(-2.3)
P 		496.1
(0.7)
P 		800.6
(3)
P 		125.7
(-2.2)
P 		779
B 38.9
(-3)
A 		195.4
(-2.2)
P 		94.9
(-2.7)
P 		415.2
(-1.1)
P 		1248.3
(3)
P 		255.6
(-1.9)
P 		1209
C 12.5
(-3)
A 		180.3
(-1.9)
P 		100.8
(-2.4)
P 		288.5
(-1.2)
P 		918.1
(3)
P 		236.1
(-1.5)
P 		906
avr 24.3
(-3) 		186.6
(-2) 		103.7
(-2.5) 		399.9
(-0.7) 		989
(3) 		205.8
(-1.9) 		965
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177489_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17767
Sequence Type Exemplar sequence
Representative Public ID C05E7.2 NCBI
Target Description C05E7.2 /REP_DB=WormBase Gene ID /WP=CE02976 /TR=Q17670 /GB=CAA91787.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077749(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077749 NCBI Caenorhabditis elegans C05E7.2 (C05E7.2) mRNA, complete cds. 11/11 None
SNAP00000014411 ENSEMBL cdna:SNAP chromosome:CEL140:X:12938669:12940594:-1 11/11 None
GENEFINDER00000014417 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12938669:12940630:-1 11/11 None
C05E7.2 ENSEMBL cdna:known chromosome:CEL140:X:12938669:12940630:-1 gene:C05E7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12938668-12940630(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05E7.2
Entrez Gene 182266 Entrez gene
SwissProt Q17670 EMBL-EBI
WormBase CE02976 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91787 Hypothetical protein C05E7.2 [Caenorhabditis elegans] ref|NP_510150.1| C05E7.2 [Caenorhabditis elegans] 1.0E-166
blast CAA91787 Hypothetical protein C05E7.2 [Caenorhabditis elegans] ref|NP_510150.1| C05E7.2 [Caenorhabditis elegans] 1.0E-158
blast CAE70367 Hypothetical protein CBG16926 [Caenorhabditis briggsae] 1.0E-147
blast CAE70366 Hypothetical protein CBG16925 [Caenorhabditis briggsae] 2.0E-46
blast CAE70366 Hypothetical protein CBG16925 [Caenorhabditis briggsae] 3.0E-46
Sequence
Target Sequence 
>C. ELEGANS:177489_AT
gaggactttggcggagatttctccatttatcttgagctgaagaacactgccaaaaaaaat
actgtcccagagaaatgtgttcgacaacctgaaaacggatgtggaggatttgggtcttgc
ctgtactgcaatgcatgtgaaacattcggtgacaaattaggagttcgagcacagctgctc
ctcgatggtcaaccaatcagctgcgctgacggattgaaaaaaggcagctatgacaacttg
aagcttgctttctgtcttccagacattgatgatgtcatcagctcacaagggcttagtaag
gagtcattcttgcagctgattcagggtgatgacggaaactctgttcgtgctatggggatc
tttgctacagtctacgtgtttgactctgacgtcagcaaacaaatggcgactcaaatcaaa
atcgagggtgtataccgtagaaccaagtacagttttttcaaggacactcaacttccggct
gaagtctactggtctcttccattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGACTTTGGCGGAGATTTCTCCA 164 403 292 Antisense
TGGGTCTTGCCTGTACTGCAATGCA 480 553 402 Antisense
AATTAGGAGTTCGAGCACAGCTGCT 200 175 446 Antisense
TGGTCAACCAATCAGCTGCGCTGAC 424 551 477 Antisense
TTGAAGCTTGCTTTCTGTCTTCCAG 649 703 529 Antisense
GATGATGTCATCAGCTCACAAGGGC 183 411 559 Antisense
GAAACTCTGTTCGTGCTATGGGGAT 120 357 626 Antisense
TATGGGGATCTTTGCTACAGTCTAC 441 653 642 Antisense
GTCTACGTGTTTGACTCTGACGTCA 525 467 661 Antisense
GGACACTCAACTTCCGGCTGAAGTC 573 525 753 Antisense
TGAAGTCTACTGGTCTCTTCCATTC 506 575 771 Antisense
Sequence Source Affymetrix Proprietary Database