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[177487_at]

Description C29F3.7 /REP_DB=WormBase Gene ID /WP=CE27741 /TR=O17616 /GB=CAB02803.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 0      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 52      6grp_total > 50      4grp_total > 56      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2160
1 2 3 4 range
A 1421.3
(-1.6)
P 		2200.3
(1.1)
P 		2771.1
(3)
P 		1014.2
(-3)
P 		1757
B 1561.5
(-1.3)
P 		2143.5
(0.4)
P 		3034.7
(3)
P 		962
(-3)
P 		2073
C 1630.9
(-0.5)
P 		2134.9
(1.2)
P 		2657.6
(3)
P 		875
(-3)
P 		1783
avr 1537.9
(-1.1) 		2159.6
(0.9) 		2821.1
(3) 		950.4
(-3) 		1871

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 701
1 2 3 4 5 6 range
A 1098
(3)
P 		464.1
(-3)
P 		838.8
(0.5)
P 		926.7
(1.4)
P 		565.9
(-2)
P 		478.6
(-2.9)
P 		634
B 985.4
(2.4)
P 		551.2
(-2.3)
P 		928.9
(1.8)
P 		1039.7
(3)
P 		482.5
(-3)
P 		563
(-2.1)
P 		557
C 655.2
(0.1)
P 		535.3
(-1.3)
P 		764.9
(1.4)
P 		899.3
(3)
P 		397.2
(-3)
P 		554.3
(-1.1)
P 		502
avr 912.9
(2.5) 		516.9
(-2.6) 		844.2
(1.6) 		955.2
(3) 		481.9
(-3) 		532
(-2.4) 		473
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 779
1 2 3 4 range
A 517.5
(0.8)
P 		477.6
(0.4)
P 		724.4
(3)
P 		148.5
(-3)
P 		576
B 498
(0.5)
P 		529.4
(0.9)
P 		703.2
(3)
P 		205
(-3)
P 		498
C 539.9
(0)
P 		613.8
(0.6)
P 		926.2
(3)
P 		147.5
(-3)
P 		779
avr 518.5
(0.4) 		540.3
(0.6) 		784.6
(3) 		167
(-3) 		618

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 226
1 2 3 4 5 6 range
A 202.4
(1.3)
P 		165
(-0.5)
P 		182.7
(0.4)
P 		235
(3)
P 		170.7
(-0.3)
P 		116.5
(-3)
P 		119
B 342.9
(3)
P 		183.5
(-3)
P 		225.6
(-1.4)
P 		275.4
(0.5)
P 		196
(-2.5)
P 		209.9
(-2)
P 		159
C 242.9
(3)
P 		163.3
(-1.2)
P 		194.7
(0.5)
P 		180.8
(-0.3)
P 		128.5
(-3)
P 		185.5
(-0)
P 		114
avr 262.7
(3) 		170.6
(-2.7) 		201
(-0.8) 		230.4
(1) 		165.1
(-3) 		170.6
(-2.7) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177487_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12534
Sequence Type Exemplar sequence
Representative Public ID C29F3.7 NCBI
Target Description C29F3.7 /REP_DB=WormBase Gene ID /WP=CE27741 /TR=O17616 /GB=CAB02803.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171555(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171555 NCBI Caenorhabditis elegans C29F3.7 (C29F3.7) mRNA, complete cds. 11/11 None
GENEFINDER00000013696 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15357602:15360097:1 11/11 None
C29F3.7 ENSEMBL cdna:known chromosome:CEL140:V:15357419:15360133:1 gene:C29F3.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013692 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15357601-15360097(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C29F3.7
Entrez Gene 180036 Entrez gene
SwissProt O17616 EMBL-EBI
WormBase CE31888 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02803 Hypothetical protein C29F3.7 [Caenorhabditis elegans] ref|NP_741643.2| C29F3.7 [Caenorhabditis elegans] 0.0
blast CAB04684 Hypothetical protein T05E12.6 [Caenorhabditis elegans] ref|NP_507327.2| T05E12.6 [Caenorhabditis elegans] 3.0E-99
blast CAB03505 Hypothetical protein ZK1037.6 [Caenorhabditis elegans] ref|NP_506799.1| ZK1037.6 [Caenorhabditis elegans] 2.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 2.1E-42
Sequence
Target Sequence 
>C. ELEGANS:177487_AT
gtcgccctacaactatatcacaacaaattcgaaacaagcttcgttttaaataagacactt
ggctttggtaaattagaggtttttgatggcggggtcactaaaacaaatttgatcacaact
tatgatgtaaacagaagcgagcttaacctacctcaagaattttttggccggttaacaaca
cttgttttcacaggtgagaccgcgtctctcaccttcacacgaagagatgatgcattcgat
gagacaacttccttcggaagaaaaggattcatttcatccgactcatatggaaactcattc
caagaagctttccatatcaacgcacccgtaaaaaatccggacactatatttaaagttaac
attgctacagcggatttaagtgggtcaaccacactaatagtatattgctatagatatatc
gagttaacaagagaactgagctttaattctacaaatcttccacctctcaacactactata
acctttcacggaaactttttgcacattgaatattacccaaacggtaccgattcaagcaaa
ctatttctcaattttgatatcgaaaagtctgtgacacgttcttctgaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGCCCTACAACTATATCACAACA 461 475 940 Antisense
GAGGTTTTTGATGGCGGGGTCACTA 316 403 1015 Antisense
GAAGCGAGCTTAACCTACCTCAAGA 496 343 1073 Antisense
TTCACAGGTGAGACCGCGTCTCTCA 456 685 1126 Antisense
CGTCTCTCACCTTCACACGAAGAGA 259 247 1142 Antisense
TGCATTCGATGAGACAACTTCCTTC 697 577 1170 Antisense
GATTCATTTCATCCGACTCATATGG 141 431 1205 Antisense
CTTTCCATATCAACGCACCCGTAAA 366 221 1247 Antisense
TTAATTCTACAAATCTTCCACCTCT 310 683 1382 Antisense
ACCTCTCAACACTACTATAACCTTT 668 87 1401 Antisense
AGTCTGTGACACGTTCTTCTGAATT 114 61 1505 Antisense
Sequence Source Affymetrix Proprietary Database