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[177486_s_at]

Description F31C3.6 /REP_DB=WormBase Gene ID /WP=CE24930 /TR=O62194 /GB=CAB07196.3 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 01      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 70      6grp_total > 23      4grp_total > 53      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 321
1 2 3 4 range
A 356.4
(3)
P 		256
(0.1)
P 		262
(0.2)
P 		151.5
(-3)
P 		205
B 398.2
(3)
P 		263.7
(0.3)
P 		240.1
(-0.1)
P 		96.9
(-3)
P 		301
C 417.8
(3)
P 		303.6
(0.2)
P 		277.5
(-0.4)
P 		171.3
(-3)
P 		247
avr 390.8
(3) 		274.4
(0.2) 		259.9
(-0.1) 		139.9
(-3) 		251

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 316
1 2 3 4 5 6 range
A 428.5
(3)
P 		299
(0.3)
P 		256.5
(-0.6)
P 		329.6
(0.9)
P 		154.7
(-2.7)
P 		139.3
(-3)
P 		289
B 373.5
(3)
P 		278.8
(0.8)
P 		309.5
(1.5)
P 		287.6
(1)
P 		194.8
(-1.1)
P 		112.6
(-3)
P 		261
C 381.6
(3)
P 		234.9
(-0.6)
P 		298.5
(1)
P 		260.2
(0)
P 		196.2
(-1.5)
P 		137.1
(-3)
P 		245
avr 394.5
(3) 		270.9
(0.2) 		288.2
(0.6) 		292.5
(0.7) 		181.9
(-1.8) 		129.7
(-3) 		265
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 129.7
(3)
P 		55.6
(-1.1)
P 		68.5
(-0.4)
P 		22.2
(-3)
P 		108
B 127
(3)
P 		65.1
(-0.5)
P 		55.6
(-1)
P 		20.6
(-3)
P 		106
C 138.3
(3)
P 		87.3
(0.2)
P 		96.7
(0.7)
P 		28.9
(-3)
P 		109
avr 131.7
(3) 		69.3
(-0.5) 		73.6
(-0.2) 		23.9
(-3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 79
(0.7)
P 		106.4
(3)
P 		55.9
(-1.2)
P 		83.6
(1.1)
P 		46.7
(-1.9)
P 		33.9
(-3)
P 		73
B 130
(3)
P 		92.8
(0.5)
P 		75.2
(-0.7)
P 		76.2
(-0.7)
P 		79.1
(-0.5)
P 		42
(-3)
P 		88
C 141.5
(3)
P 		71.7
(-1.4)
P 		76
(-1.1)
P 		52.3
(-2.6)
P 		63.5
(-1.9)
P 		45.9
(-3)
P 		96
avr 116.8
(3) 		90.3
(0.9) 		69
(-0.8) 		70.7
(-0.6) 		63.1
(-1.2) 		40.6
(-3) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177486_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1652
Sequence Type Exemplar sequence
Representative Public ID F31C3.6 NCBI
Target Description F31C3.6 /REP_DB=WormBase Gene ID /WP=CE24930 /TR=O62194 /GB=CAB07196.3 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NR_002345(11), NM_001026264(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NR_002345 NCBI Caenorhabditis elegans F31C3.6, miscRNA. 11/11 None
NM_001026264 NCBI Caenorhabditis elegans F31C3.6a (F31C3.6) mRNA, complete cds. 11/11 None
SNAP00000023489 ENSEMBL cdna:SNAP chromosome:CEL140:I:15061912:15064575:-1 11/11 None
GENEFINDER00000023499 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:15061912:15068762:-1 11/11 None
F31C3.6a ENSEMBL cdna:known chromosome:CEL140:I:15061772:15067121:-1 gene:F31C3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:15061842-15066813(-) 100.0 100.0
Public Domain and Genome References
Ensembl F31C3.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07196 Hypothetical protein F31C3.6a [Caenorhabditis elegans] ref|NP_001021435.1| F31C3.6a [Caenorhabditis elegans] 0.0
blast CAE72555 Hypothetical protein CBG19739 [Caenorhabditis briggsae] 0.0
blast CAB07196 Hypothetical protein F31C3.6a [Caenorhabditis elegans] ref|NP_001021435.1| F31C3.6a [Caenorhabditis elegans] 1.0E-174
blast CAE72555 Hypothetical protein CBG19739 [Caenorhabditis briggsae] 1.0E-118
blast XP_665229 senescence-associated protein [Cryptosporidium hominis] gb|EAL34999.1| senescence-associated protein [Cryptosporidium hominis] 2.0E-36
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021435.1 1 260-282
F31C3.6a 1 260-282
SNAP00000023489 1 73-95
GENEFINDER00000023499 1 325-347
Sequence
Target Sequence 
>C. ELEGANS:177486_S_AT
cgctagccatacaattcctttacgacttgcgacgagttgtagatgttgcaaaggaacgta
tacgtcagcgccgctttattccggcgcttccagttatcattgaggacgtcgaaaatgaga
tagattacgtggaagctgttgaggggccagtggatatcgctagttcagcgacgcccgagt
cgtcgccacgcagtgagcagaaatcagtggatagcgggagagaatcgagagatgaatccg
aggaagacgaggagactgctcctgggacagaggggcaaaaggagatttctacaatgacac
aaagtaaagtgtcagatattgtgaaatcttttgaaaaatctgctccccggccttcatatg
tcccgattatgctgaactcctcgatgcggaagaaaaaaccgctgaaggttgcttcaacaa
cccacgtggattctccagaggaagtagctcaagcgtttagaagtcgaattaaggcgccaa
ctgcgttcaccgataaaaaaagtcctcgtgagcgaaaaggatatgcagtttttccatctg
atggaacgttcaacaagtcattgccacgtcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCTAGCCATACAATTCCTTTACGA 139 251 1070 Antisense
ATTCCTTTACGACTTGCGACGAGTT 471 5 1083 Antisense
CGTATACGTCAGCGCCGCTTTATTC 393 245 1126 Antisense
GGCCAGTGGATATCGCTAGTTCAGC 20 545 1214 Antisense
TCGTCGCCACGCAGTGAGCAGAAAT 343 605 1249 Antisense
ACTGCTCCTGGGACAGAGGGGCAAA 518 95 1324 Antisense
TATGTCCCGATTATGCTGAACTCCT 254 655 1426 Antisense
ATGCTGAACTCCTCGATGCGGAAGA 263 43 1438 Antisense
TTGCTTCAACAACCCACGTGGATTC 705 689 1478 Antisense
AATTAAGGCGCCAACTGCGTTCACC 480 175 1536 Antisense
GTTCAACAAGTCATTGCCACGTCGA 640 443 1617 Antisense
Sequence Source Affymetrix Proprietary Database