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[177484_at]

Description K05D4.7 /REP_DB=WormBase Gene ID /WP=CE16232 /TR=O45661 /GB=CAB07254.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 26      6grp_cgc > 99      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 2.9
(-3)
A 		30.9
(2.9)
A 		18.6
(0.3)
A 		31.5
(3)
A 		29
B 3.6
(-2.6)
A 		8.9
(-1.5)
A 		1.9
(-3)
A 		30.4
(3)
A 		29
C 4.5
(-2.6)
A 		21.8
(0.3)
A 		1.9
(-3)
A 		38.3
(3)
A 		36
avr 3.7
(-3) 		20.5
(0.4) 		7.5
(-2.2) 		33.4
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 19
(-0.8)
A 		5.6
(-3)
A 		5.6
(-3)
A 		5.9
(-3)
A 		42.3
(3)
A 		8.7
(-2.5)
A 		37
B 22.7
(1.7)
A 		20.4
(1.1)
A 		5
(-2.9)
A 		4.6
(-3)
A 		27.6
(3)
A 		10
(-1.6)
A 		23
C 30.7
(0.5)
A 		48.3
(3)
A 		35.3
(1.2)
A 		5.4
(-3)
A 		43.9
(2.4)
A 		25.7
(-0.2)
A 		43
avr 24.1
(0.5) 		24.8
(0.6) 		15.3
(-1.2) 		5.3
(-3) 		37.9
(3) 		14.8
(-1.3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.1
(-3)
A 		6.7
(3)
A 		4.9
(1.1)
A 		4.6
(0.8)
A 		6
B 1.1
(-2.3)
A 		2.2
(-1.2)
A 		0.4
(-3)
A 		6.5
(3)
A 		6
C 1.5
(-2.1)
A 		6.3
(2.8)
A 		0.6
(-3)
A 		6.5
(3)
A 		6
avr 1.2
(-3) 		5.1
(2) 		2
(-2) 		5.9
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 3.5
(-1.8)
A 		2
(-2.6)
A 		1.2
(-3)
A 		1.5
(-2.8)
A 		12.8
(3)
A 		2.1
(-2.5)
A 		12
B 7.9
(1)
A 		6.8
(0.4)
A 		1.2
(-3)
A 		1.2
(-3)
A 		11.2
(3)
A 		3.7
(-1.5)
A 		10
C 11.4
(1.5)
A 		14.7
(3)
A 		9
(0.5)
A 		1.1
(-3)
A 		14.2
(2.8)
A 		8.6
(0.3)
A 		14
avr 7.6
(0.3) 		7.8
(0.4) 		3.8
(-1.7) 		1.3
(-3) 		12.7
(3) 		4.8
(-1.2) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177484_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13378
Sequence Type Exemplar sequence
Representative Public ID K05D4.7 NCBI
Target Description K05D4.7 /REP_DB=WormBase Gene ID /WP=CE16232 /TR=O45661 /GB=CAB07254.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K05D4.7 ENSEMBL cdna:pseudogene chromosome:CEL140:V:16190311:16191531:1 gene:K05D4.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023577 5/11 Cross Hyb Matching Probes None
GENEFINDER00000023582 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16190467-16191409(+) 100.0 100.0
Public Domain and Genome References
Ensembl K05D4.7
Sequence
Target Sequence 
>C. ELEGANS:177484_AT
ttaccaccttgctttgcatggtcgctgtttcaatcatcaccatcttcgaaaaccgttact
tccttctattcgccgaacacacttggtggcggtttgctcgtcgaccattccttgccatca
actacattctcgccattctctaccacgtcccaaccgtgctcggcgcgccggagcaaaaca
gtgcccgagctgcaactttcaaagaattccccgaatttcggcagttagattccccggaaa
acccgatttatgtactggttttgaataacccatgggtttcgtatagacagattgcaatgg
aagtgacagttgtaacagagggcttgactatagctttcctgctaaaatataaaatgaaaa
acggagtgaaagaggtgaaaatgtcggagaccactgcaaggttgcaaaaagcttttttaa
aagctttatatattcaggtcttactaccgttcatggtgattctggttccatctatagtat
cccttttttccgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTACCACCTTGCTTTGCATGGTCGC 34 671 17 Antisense
GGTCGCTGTTTCAATCATCACCATC 35 503 36 Antisense
CGGCGCGCCGGAGCAAAACAGTGCC 496 241 177 Antisense
CGGAGCAAAACAGTGCCCGAGCTGC 534 243 185 Antisense
AACCCATGGGTTTCGTATAGACAGA 251 147 283 Antisense
AGGGCTTGACTATAGCTTTCCTGCT 111 59 335 Antisense
GTCGGAGACCACTGCAAGGTTGCAA 234 471 399 Antisense
ATATTCAGGTCTTACTACCGTTCAT 300 19 446 Antisense
CTACCGTTCATGGTGATTCTGGTTC 671 225 460 Antisense
ATTCTGGTTCCATCTATAGTATCCC 239 7 475 Antisense
CATCTATAGTATCCCTTTTTTCCGG 225 213 485 Antisense
Sequence Source Affymetrix Proprietary Database