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[177483_at]

Description F28D1.8 /REP_DB=WormBase Gene ID /WP=CE05748 /TR=Q19879 /GB=CAA94603.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 07      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 16.4
(-2)
A 		14.5
(-3)
A 		25.6
(3)
A 		22.5
(1.3)
A 		11
B 33.7
(2.3)
A 		4.8
(-3)
A 		30.7
(1.8)
A 		37.3
(3)
A 		33
C 8.7
(2)
A 		4
(-1.8)
A 		2.5
(-3)
A 		9.9
(3)
A 		7
avr 19.6
(1.6) 		7.8
(-3) 		19.6
(1.6) 		23.2
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 31.3
(3)
A 		4.8
(-2.7)
A 		30.7
(2.9)
A 		3.4
(-3)
A 		11
(-1.4)
A 		18.4
(0.2)
A 		28
B 17.2
(-0)
A 		32.6
(3)
A 		31
(2.7)
M 		2.1
(-3)
A 		7.7
(-1.9)
A 		13.2
(-0.8)
A 		31
C 42.9
(3)
A 		17.1
(-0.9)
A 		14.6
(-1.3)
A 		3.2
(-3)
A 		17.4
(-0.9)
A 		23.5
(0.1)
A 		40
avr 30.5
(3) 		18.2
(0.3) 		25.4
(1.9) 		2.9
(-3) 		12
(-1) 		18.4
(0.4) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 6
(1.8)
A 		3.2
(-3)
A 		6.7
(3)
A 		3.3
(-2.8)
A 		4
B 10.8
(3)
A 		1.2
(-3)
A 		7.1
(0.7)
A 		7.9
(1.2)
A 		10
C 2.9
(3)
A 		1.1
(-2.4)
A 		0.9
(-3)
A 		1.7
(-0.6)
A 		2
avr 6.6
(3) 		1.8
(-3) 		4.9
(0.9) 		4.3
(0.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 5.8
(2.1)
A 		1.7
(-2.2)
A 		6.7
(3)
A 		0.9
(-3)
A 		3.3
(-0.5)
A 		4.5
(0.7)
A 		6
B 6
(0.2)
A 		10.9
(3)
A 		7.5
(1)
M 		0.5
(-3)
A 		3.1
(-1.5)
A 		4.9
(-0.5)
A 		10
C 15.9
(3)
A 		5.2
(-1.2)
A 		3.7
(-1.8)
A 		0.7
(-3)
A 		5.6
(-1.1)
A 		7.9
(-0.2)
A 		15
avr 9.2
(3) 		5.9
(0.7) 		6
(0.7) 		0.7
(-3) 		4
(-0.7) 		5.8
(0.6) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177483_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8834
Sequence Type Exemplar sequence
Representative Public ID F28D1.8 NCBI
Target Description F28D1.8 /REP_DB=WormBase Gene ID /WP=CE05748 /TR=Q19879 /GB=CAA94603.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069963
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000029704 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12387385:12391017:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_069963 5/11 Cross Hyb Matching Probes None
SNAP00000029697 5/11 Cross Hyb Matching Probes None
F28D1.8 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12387390-12389545(-) 87.61 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94603 Hypothetical protein F28D1.8 [Caenorhabditis elegans] ref|NP_502364.1| F28D1.8 [Caenorhabditis elegans] 1.0E-114
blast CAA94601 Hypothetical protein F28D1.7 [Caenorhabditis elegans] ref|NP_502365.1| Ribosomal Protein, Small subunit family member (rps-23) [Caenorhabditis elegans] sp|Q19877|RS23_CAEEL 40S ribosomal protein S23 emb|CAE59851.1| Hypothetical protein CBG03324 [Caenorhabditis briggsae] 2.0E-77
blast P90707 40S ribosomal protein S23 gb|AAC47632.1| ribosomal protein S23 [Brugia malayi] 4.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR006032 EMBL-EBI Ribosomal protein S12/S23 2.0E-75
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000029704 1 265-287
Sequence
Target Sequence 
>C. ELEGANS:177483_AT
aacaactgccacaggtacaggaactacagaagcagcagcaactacagtaaccgaaaccaa
cgaagaagcagataatgaagaagacgaggaagaagacgaagatgatgatgatgatggaag
tgttgatggaacaactgccggatctactgaatcgaaaggtcctggtactacaagtaaaag
tacggataagggaaagaagaagaaaaagacgaagaaaggtggaaaaaagaagaaaagtgg
tgctggaaaaggtaaaggaaagaagaaatcaaaagtttcgaaagaaaaaaaaggcggcaa
aaaagtgcaaaagaagaagccggcatcgaagccaacgaaaaagaaaaaaaaaaataagcc
attttcggaacattttgaaaaaaaaagaagaaaaaaccacctgccaattggttcgagtgt
tctgaattcctgtttttctgctaaaatcgatttcaaaatgcaaactttttttctgtctat
ttttccattttcgtctctcaattgtagtagtttacaactcgtttctcaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAACTGCCACAGGTACAGGAACT 563 133 744 Antisense
ACTACAGAAGCAGCAGCAACTACAG 478 101 766 Antisense
TTGATGGAACAACTGCCGGATCTAC 472 705 866 Antisense
TCGAAAGGTCCTGGTACTACAAGTA 291 601 895 Antisense
GAAGCCGGCATCGAAGCCAACGAAA 640 343 1059 Antisense
ATAAGCCATTTTCGGAACATTTTGA 596 23 1097 Antisense
ACCACCTGCCAATTGGTTCGAGTGT 497 85 1139 Antisense
GTTCTGAATTCCTGTTTTTCTGCTA 250 443 1162 Antisense
AATGCAAACTTTTTTTCTGTCTATT 437 165 1200 Antisense
TTCCATTTTCGTCTCTCAATTGTAG 285 701 1226 Antisense
GTAGTTTACAACTCGTTTCTCAAGA 158 453 1250 Antisense
Sequence Source Affymetrix Proprietary Database