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[177482_at]

Description ZK525.2 /REP_DB=WormBase Gene ID /WP=CE16732 /TR=O46024 /GB=CAB05023.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 22      4grp_highest_8_8 > 09      4grp_high_8_8 > 61      6grp_highest_nonorm > 42      6grp_total > 22      4grp_total > 58      6grp_highest_sub > 02      6grp_cgc > 61      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 813
1 2 3 4 range
A 758.1
(-1.4)
P 		1123.7
(1.6)
P 		1301.8
(3)
P 		564.3
(-3)
P 		738
B 926.9
(-0.1)
P 		1129.4
(1.5)
P 		1325.1
(3)
P 		551.8
(-3)
P 		773
C 889.8
(-0.6)
P 		1364.3
(3)
P 		1345.9
(2.9)
P 		574.9
(-3)
P 		789
avr 858.3
(-0.7) 		1205.8
(2.1) 		1324.3
(3) 		563.7
(-3) 		761

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 700
1 2 3 4 5 6 range
A 883.9
(0.5)
P 		992.6
(1.6)
P 		1143.2
(3)
P 		697.7
(-1.3)
P 		693.8
(-1.3)
P 		516.2
(-3)
P 		627
B 1058.5
(1.6)
P 		1148.6
(2.4)
P 		1215.8
(3)
P 		1028.1
(1.4)
P 		758.9
(-0.9)
P 		516.9
(-3)
P 		699
C 851.1
(-0.1)
P 		1165.2
(3)
P 		819.8
(-0.5)
P 		819.7
(-0.5)
P 		566.6
(-3)
P 		591.1
(-2.8)
P 		599
avr 931.2
(1.2) 		1102.1
(3) 		1059.6
(2.5) 		848.5
(0.3) 		673.1
(-1.6) 		541.4
(-3) 		561
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 387
1 2 3 4 range
A 276
(1.5)
P 		243.9
(0.8)
P 		340.3
(3)
P 		82.6
(-3)
P 		258
B 295.6
(2.6)
P 		278.9
(2.1)
P 		307.1
(3)
P 		117.6
(-3)
P 		190
C 294.5
(0.2)
P 		392.2
(1.8)
P 		469.1
(3)
P 		96.9
(-3)
P 		372
avr 288.7
(1.2) 		305
(1.5) 		372.2
(3) 		99
(-3) 		273

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 257
1 2 3 4 5 6 range
A 162.9
(-2)
P 		353
(3)
P 		249
(0.3)
P 		177
(-1.6)
P 		209.4
(-0.8)
P 		125.7
(-3)
P 		227
B 368.3
(2.6)
P 		382.3
(3)
P 		295.2
(0.2)
P 		272.3
(-0.5)
P 		308.3
(0.7)
P 		192.8
(-3)
P 		190
C 315.5
(1.7)
P 		355.5
(3)
P 		208.7
(-1.6)
P 		164.8
(-3)
P 		183.3
(-2.4)
P 		197.9
(-2)
P 		191
avr 282.2
(0.4) 		363.6
(3) 		251
(-0.5) 		204.7
(-2) 		233.7
(-1.1) 		172.1
(-3) 		192
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177482_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7016
Sequence Type Exemplar sequence
Representative Public ID ZK525.2 NCBI
Target Description ZK525.2 /REP_DB=WormBase Gene ID /WP=CE16732 /TR=O46024 /GB=CAB05023.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067420(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067420 NCBI Caenorhabditis elegans AQuaPorin or aquaglyceroporin related family member (aqp-11) (aqp-11) mRNA, complete cds. 11/11 None
SNAP00000034993 ENSEMBL cdna:SNAP chromosome:CEL140:III:13672806:13674205:1 11/11 None
GENEFINDER00000034997 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13672806:13674205:1 11/11 None
ZK525.2 ENSEMBL cdna:known chromosome:CEL140:III:13672806:13674205:1 gene:ZK525.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13672801-13674201(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol aqp-11
Ensembl ZK525.2
Entrez Gene 191343 Entrez gene
SwissProt O46024 EMBL-EBI
WormBase CE33909 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05023 Hypothetical protein ZK525.2 [Caenorhabditis elegans] ref|NP_499821.2| AQuaPorin or aquaglyceroporin related family member (aqp-11) [Caenorhabditis elegans] 1.0E-146
blast CAB05023 Hypothetical protein ZK525.2 [Caenorhabditis elegans] ref|NP_499821.2| AQuaPorin or aquaglyceroporin related family member (aqp-11) [Caenorhabditis elegans] 1.0E-144
blast CAE71341 Hypothetical protein CBG18243 [Caenorhabditis briggsae] 1.0E-129
blast CAE71341 Hypothetical protein CBG18243 [Caenorhabditis briggsae] 1.0E-126
blast CAA88476 Hypothetical protein ZK1321.3 [Caenorhabditis elegans] ref|NP_496105.1| AQuaPorin or aquaglyceroporin related family member (aqp-10) [Caenorhabditis elegans] sp|Q09369|YS33_CAEEL Hypothetical protein ZK1321.3 in chromosome II 6.0E-24
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499821.2 7 10-28,41-60,70-89,109-131,159-178,191-210,230-252
ZK525.2 7 10-28,41-60,70-89,109-131,159-178,191-210,230-252
SNAP00000034993 7 10-28,41-60,70-89,109-131,159-178,191-210,230-252
GENEFINDER00000034997 3 170-189,202-221,241-263
Sequence
Target Sequence 
>C. ELEGANS:177482_AT
gcaaccgaactgcattctgcagcccgctggcaccaatcgaacaatatctcttcggaaaat
tgaggctcggggagctcctccaaactcttgccgctcagttcaccgccgggtactttgcgt
ttagctttgcccgaacaatttggcttcgagcatacagtaccactgatgcccattcctacg
tcatgggacttatggagtcctgtggattcaatcatccggtaggtaaagggaatgggcaaa
agtttgcgaaatatccaatttactatcacttggcaattgagctcatcggaactttcatcg
ttcgtcacgtattgacacgcgccacttcggaggctcgtgattcacgagtccgatttgtgt
tcccggcacttttcatggctgctgtttttactggaactgtaacatttgttggagaccagg
cactggatccactagtggcctcaactctattcttcggatgtcgtgggctcaattttgaga
attatatgcttgtttattggattgctccaacaattggatggatggcttctgcctattggg
actc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAACCGAACTGCATTCTGCAGCCC 498 317 263 Antisense
AAATTGAGGCTCGGGGAGCTCCTCC 678 113 319 Antisense
GGCTTCGAGCATACAGTACCACTGA 337 537 404 Antisense
GATGCCCATTCCTACGTCATGGGAC 208 415 427 Antisense
CATCGGAACTTTCATCGTTCGTCAC 44 211 546 Antisense
CGTTCGTCACGTATTGACACGCGCC 471 247 561 Antisense
CCACTTCGGAGGCTCGTGATTCACG 45 271 584 Antisense
TCACGAGTCCGATTTGTGTTCCCGG 709 619 604 Antisense
AGGCACTGGATCCACTAGTGGCCTC 556 53 680 Antisense
TATTCTTCGGATGTCGTGGGCTCAA 100 661 710 Antisense
GGATGGCTTCTGCCTATTGGGACTC 277 515 782 Antisense
Sequence Source Affymetrix Proprietary Database