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[177481_at]

Description F42G4.5 /REP_DB=WormBase Gene ID /WP=CE10326 /TR=Q9XVN5 /GB=CAB03094.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 55      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 960
1 2 3 4 range
A 954
(3)
P 		291.2
(-1.2)
P 		296
(-1.2)
P 		17.5
(-3)
A 		937
B 930.5
(3)
P 		234.4
(-1.8)
P 		282.2
(-1.5)
P 		65.8
(-3)
A 		865
C 977.9
(3)
P 		209.7
(-2.3)
P 		274.3
(-1.8)
P 		105.7
(-3)
A 		872
avr 954.1
(3) 		245.1
(-1.8) 		284.2
(-1.5) 		63
(-3) 		891

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 592
1 2 3 4 5 6 range
A 372
(1)
P 		258.6
(-0.5)
P 		461.1
(2.1)
P 		535.6
(3)
P 		496.3
(2.5)
P 		55.9
(-3)
A 		480
B 223.4
(-1.2)
P 		377.9
(0.6)
P 		572.6
(3)
P 		463.4
(1.7)
P 		452.1
(1.5)
P 		78.2
(-3)
A 		494
C 231.9
(-1.8)
P 		394.7
(0.1)
P 		556.7
(2)
P 		647.9
(3)
P 		445.2
(0.7)
P 		126.6
(-3)
A 		521
avr 275.8
(-0.5) 		343.7
(0.3) 		530.1
(2.8) 		549
(3) 		464.5
(1.9) 		86.9
(-3) 		462
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 345
1 2 3 4 range
A 347.3
(3)
P 		63.2
(-1.9)
P 		77.4
(-1.7)
P 		2.6
(-3)
A 		345
B 296.7
(3)
P 		57.9
(-2.1)
P 		65.4
(-1.9)
P 		14
(-3)
A 		283
C 323.7
(3)
P 		60.3
(-2.2)
P 		95.6
(-1.5)
P 		17.8
(-3)
A 		306
avr 322.6
(3) 		60.5
(-2.1) 		79.5
(-1.7) 		11.5
(-3) 		311

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 68.6
(-0.6)
P 		92
(0.5)
P 		100.4
(0.8)
P 		135.8
(2.4)
P 		149.8
(3)
P 		13.6
(-3)
A 		136
B 77.7
(-1.1)
P 		125.8
(0.8)
P 		139.1
(1.3)
P 		122.7
(0.6)
P 		183.7
(3)
P 		29.1
(-3)
A 		155
C 86
(-0.4)
P 		120.4
(1.6)
P 		141.7
(2.9)
P 		130.3
(2.2)
P 		144.1
(3)
P 		42.4
(-3)
A 		102
avr 77.4
(-0.8) 		112.7
(0.9) 		127.1
(1.5) 		129.6
(1.6) 		159.2
(3) 		28.4
(-3) 		131
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177481_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2902
Sequence Type Exemplar sequence
Representative Public ID F42G4.5 NCBI
Target Description F42G4.5 /REP_DB=WormBase Gene ID /WP=CE10326 /TR=Q9XVN5 /GB=CAB03094.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064377(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064377 NCBI Caenorhabditis elegans F42G4.5 (F42G4.5) mRNA, complete cds. 11/11 None
SNAP00000028441 ENSEMBL cdna:SNAP chromosome:CEL140:II:13073643:13076001:1 11/11 None
GENEFINDER00000028447 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13056864:13076001:1 10/11 None
F42G4.5 ENSEMBL cdna:known chromosome:CEL140:II:13073565:13076001:1 gene:F42G4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13073561-13075998(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F42G4.5
Entrez Gene 185674 Entrez gene
SwissProt Q9XVN5 EMBL-EBI
WormBase CE35535 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03095 Hypothetical protein F42G4.3a [Caenorhabditis elegans] ref|NP_496776.1| ZYXin family member (zyx-1) [Caenorhabditis elegans] 1.0E-178
blast CAB03094 Hypothetical protein F42G4.5 [Caenorhabditis elegans] ref|NP_496778.2| F42G4.5 [Caenorhabditis elegans] 1.0E-144
blast CAE59426 Hypothetical protein CBG02797 [Caenorhabditis briggsae] 1.0E-141
blast CAB03094 Hypothetical protein F42G4.5 [Caenorhabditis elegans] ref|NP_496778.2| F42G4.5 [Caenorhabditis elegans] 1.0E-127
blast CAB03094 Hypothetical protein F42G4.5 [Caenorhabditis elegans] ref|NP_496778.2| F42G4.5 [Caenorhabditis elegans] 1.0E-113
blast CAE59425 Hypothetical protein CBG02795 [Caenorhabditis briggsae] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 9.9E-14
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 3.0E-11
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 3.1E-8
Sequence
Target Sequence 
>C. ELEGANS:177481_AT
aaagcctatcgtcaacactttcgtcgccacgtacaccgagcccaagagccactttttcgg
attatccgaatccatgtgaactcatcctactctctgctctccaggctcacataatatcgg
gagacgacatgcgaaattgctccactgaaattcaggccctgacgctttgtgaaaagcaga
agcttatcaactttttcaaaccagaaggcgacgcttctggaattattgagaacaacgctt
tcaaggccttcaactgctcgaatctctcatcagaccttctcaaggaagacggctccgagc
tcttggagcaactttggctgaagcttaacagtctcgtcatcccatccctgcaatcaatgt
gctttccactcatcgaaatcgacacgtcatttgatgttcagaccctcatattgactgcct
tccgcgacagagttctcgcaaagtccaaaccccgctaccaaaagaagatccgttcgaaga
ccgattcctgcttgtcaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCCTATCGTCAACACTTTCGTC 11 125 185 Antisense
AAGAGCCACTTTTTCGGATTATCCG 487 153 228 Antisense
GAATCCATGTGAACTCATCCTACTC 508 329 252 Antisense
TGCTCTCCAGGCTCACATAATATCG 144 581 279 Antisense
GACGACATGCGAAATTGCTCCACTG 651 379 307 Antisense
AGAACAACGCTTTCAAGGCCTTCAA 463 71 413 Antisense
TGAAGCTTAACAGTCTCGTCATCCC 239 575 503 Antisense
CATCCCATCCCTGCAATCAATGTGC 520 211 522 Antisense
ATCAATGTGCTTTCCACTCATCGAA 230 27 537 Antisense
GTTCAGACCCTCATATTGACTGCCT 382 445 580 Antisense
CGAAGACCGATTCCTGCTTGTCAAG 541 253 659 Antisense
Sequence Source Affymetrix Proprietary Database