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[177480_at]

Description W02B8.1 /REP_DB=WormBase Gene ID /WP=CE24027 /TR=Q9TVV2 /GB=CAA21672.3 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 34      6grp_total > 01      4grp_total > 38      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 408.6
(3)
P 		284.6
(-3)
A 		323
(-1.1)
A 		380.6
(1.6)
P 		124
B 468
(3)
P 		363.2
(-1.6)
P 		332.6
(-3)
P 		361
(-1.7)
P 		135
C 445.5
(2.7)
P 		451.5
(3)
P 		353.2
(-1.5)
P 		320.5
(-3)
P 		131
avr 440.7
(3) 		366.4
(-1.3) 		336.3
(-3) 		354
(-2) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 293
1 2 3 4 5 6 range
A 201.5
(-2)
A 		444.7
(3)
P 		152.2
(-3)
M 		261.2
(-0.8)
A 		207.5
(-1.9)
A 		247.8
(-1)
A 		293
B 241.4
(-0.5)
A 		369.3
(3)
P 		253.1
(-0.2)
A 		267.6
(0.2)
A 		280.1
(0.5)
A 		151.6
(-3)
A 		218
C 327.6
(1.4)
P 		315.5
(1)
M 		334.1
(1.6)
M 		202.1
(-3)
A 		373.1
(3)
P 		225
(-2.2)
A 		171
avr 256.8
(-1.3) 		376.5
(3) 		246.5
(-1.6) 		243.6
(-1.7) 		286.9
(-0.2) 		208.1
(-3) 		168
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 148.8
(3)
P 		61.8
(-2.6)
A 		84.4
(-1.2)
A 		55.7
(-3)
P 		93
B 149.2
(3)
P 		89.7
(-1.9)
P 		77.1
(-3)
P 		76.9
(-3)
P 		72
C 147.5
(3)
P 		129.8
(1.9)
P 		123.1
(1.4)
P 		54
(-3)
P 		94
avr 148.5
(3) 		93.8
(-0.8) 		94.9
(-0.7) 		62.2
(-3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 37.2
(-2.8)
A 		158.2
(3)
P 		33.2
(-3)
M 		66.3
(-1.4)
A 		62.6
(-1.6)
A 		60.3
(-1.7)
A 		125
B 84
(-0.5)
A 		122.9
(3)
P 		61.5
(-2.5)
A 		70.9
(-1.7)
A 		113.8
(2.2)
A 		56.5
(-3)
A 		66
C 121.4
(3)
P 		96.3
(1.1)
M 		85
(0.3)
M 		40.6
(-3)
A 		120.7
(2.9)
P 		75.3
(-0.4)
A 		81
avr 80.9
(-1.1) 		125.8
(3) 		59.9
(-2.9) 		59.3
(-3) 		99
(0.6) 		64
(-2.6) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177480_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2643
Sequence Type Exemplar sequence
Representative Public ID W02B8.1 NCBI
Target Description W02B8.1 /REP_DB=WormBase Gene ID /WP=CE24027 /TR=Q9TVV2 /GB=CAA21672.3 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064512(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064512 NCBI Caenorhabditis elegans W02B8.1 (W02B8.1) mRNA, complete cds. 11/11 None
W02B8.1 ENSEMBL cdna:known chromosome:CEL140:II:13898435:13901994:-1 gene:W02B8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13898431-13900595(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W02B8.1
Entrez Gene 175042 Entrez gene
SwissProt Q9TVV2 EMBL-EBI
WormBase CE24027 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03461 Hypothetical protein W02B8.1 [Caenorhabditis elegans] emb|CAA21672.3| Hypothetical protein W02B8.1 [Caenorhabditis elegans] ref|NP_496913.1| W02B8.1 [Caenorhabditis elegans] 4.0E-93
blast CAE73258 Hypothetical protein CBG20674 [Caenorhabditis briggsae] 1.0E-35
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496913.1 1 15-37
W02B8.1 1 15-37
Sequence
Target Sequence 
>C. ELEGANS:177480_AT
ttcgcccgtgaggatcccagcgaatcccggaacatatttgttctgggaatctgcgtccta
ttcggatggatgattgtcattttaatttgcgcttcaccccacttgttccgaaactatctc
aaaaaatggtttaaacacgacgaggatccgctcaccgacaaaattcggaaagcagaagcc
cgtcttcaggagacactccggcttgcgcagaagccttcgaattttctcgtcgatcaggct
gcggttatgtcaacgatggctgttaggcccgaaaaatctgaggtagaggccgacccgtat
aacgctcggattggtcgaggaggaggacgaggacgaatgtacctgaaaatcctgtctaaa
aacccccaaaaagtgcctattttctcttatcaaacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGCCCGTGAGGATCCCAGCGAAT 668 687 28 Antisense
GAATCTGCGTCCTATTCGGATGGAT 65 329 74 Antisense
TGTCATTTTAATTTGCGCTTCACCC 368 559 102 Antisense
CCCACTTGTTCCGAAACTATCTCAA 50 259 125 Antisense
GGATCCGCTCACCGACAAAATTCGG 244 513 171 Antisense
AGAAGCCCGTCTTCAGGAGACACTC 347 73 201 Antisense
TCCGGCTTGCGCAGAAGCCTTCGAA 702 593 224 Antisense
CGAATTTTCTCGTCGATCAGGCTGC 48 253 245 Antisense
GGCTGCGGTTATGTCAACGATGGCT 294 539 264 Antisense
ATCTGAGGTAGAGGCCGACCCGTAT 58 3 303 Antisense
AGTGCCTATTTTCTCTTATCAAACC 669 59 399 Antisense
Sequence Source Affymetrix Proprietary Database