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[177479_at]

Description R03G8.1 /REP_DB=WormBase Gene ID /WP=CE16283 /TR=Q21671 /GB=CAA93679.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 28.6
(1.1)
A 		5.9
(-3)
A 		18.5
(-0.7)
A 		38.9
(3)
A 		33
B 16.7
(-1.5)
A 		28.9
(0.5)
A 		44
(3)
A 		7.9
(-3)
A 		36
C 34.5
(-1.9)
A 		25.3
(-2.7)
A 		22.3
(-3)
A 		89.1
(3)
P 		67
avr 26.6
(-1.4) 		20
(-3) 		28.3
(-1) 		45.3
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 6.8
(-3)
A 		35.8
(3)
A 		17.2
(-0.8)
A 		16.2
(-1.1)
A 		21.6
(0.1)
A 		28
(1.4)
A 		29
B 1.8
(-3)
A 		21.5
(3)
A 		1.8
(-3)
A 		7.5
(-1.3)
A 		20.6
(2.7)
A 		16.3
(1.4)
A 		20
C 4.6
(-3)
A 		27.5
(3)
A 		6.7
(-2.4)
A 		6.5
(-2.5)
A 		21.8
(1.5)
A 		4.8
(-2.9)
A 		23
avr 4.4
(-3) 		28.3
(3) 		8.6
(-1.9) 		10.1
(-1.6) 		21.3
(1.2) 		16.4
(0) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 10.4
(3)
A 		1.3
(-3)
A 		4.8
(-0.7)
A 		5.7
(-0.1)
A 		9
B 5.3
(-0.5)
A 		7.1
(0.8)
A 		10.2
(3)
A 		1.7
(-3)
A 		9
C 11.4
(0.2)
A 		7.3
(-3)
A 		7.8
(-2.6)
A 		15
(3)
P 		8
avr 9
(3) 		5.2
(-3) 		7.6
(0.8) 		7.5
(0.6) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.3
(-3)
A 		12.7
(3)
A 		3.7
(-1.7)
A 		4.1
(-1.5)
A 		6.5
(-0.3)
A 		6.8
(-0.1)
A 		11
B 0.6
(-2.9)
A 		7.1
(2)
A 		0.4
(-3)
A 		2
(-1.8)
A 		8.4
(3)
A 		6.1
(1.3)
A 		8
C 1.7
(-2.7)
A 		8.4
(3)
A 		1.7
(-2.7)
A 		1.3
(-3)
A 		7.1
(1.9)
A 		1.6
(-2.7)
A 		7
avr 1.2
(-3) 		9.4
(3) 		1.9
(-2.5) 		2.5
(-2) 		7.3
(1.5) 		4.8
(-0.4) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177479_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17492
Sequence Type Exemplar sequence
Representative Public ID R03G8.1 NCBI
Target Description R03G8.1 /REP_DB=WormBase Gene ID /WP=CE16283 /TR=Q21671 /GB=CAA93679.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077771(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077771 NCBI Caenorhabditis elegans R03G8.1 (R03G8.1) mRNA, complete cds. 11/11 None
GENEFINDER00000031821 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13084493:13088531:1 11/11 None
R03G8.1 ENSEMBL cdna:known chromosome:CEL140:X:13084493:13087566:1 gene:R03G8.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031812 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13084492-13087566(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R03G8.1
Entrez Gene 187544 Entrez gene
SwissProt Q21671 EMBL-EBI
WormBase CE16283 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93679 Hypothetical protein R03G8.1 [Caenorhabditis elegans] ref|NP_510172.1| R03G8.1 [Caenorhabditis elegans] 0.0
blast CAB00864 Hypothetical protein K03A11.4 [Caenorhabditis elegans] ref|NP_510170.2| K03A11.4 [Caenorhabditis elegans] 0.0
blast CAE61382 Hypothetical protein CBG05229 [Caenorhabditis briggsae] 0.0
blast CAB00864 Hypothetical protein K03A11.4 [Caenorhabditis elegans] ref|NP_510170.2| K03A11.4 [Caenorhabditis elegans] 1.0E-141
blast CAE61382 Hypothetical protein CBG05229 [Caenorhabditis briggsae] 1.0E-118
Protein Domains
Database ID Description E-Value
Pfam IPR004245 EMBL-EBI Protein of unknown function DUF229 1.0E-126
Pfam IPR004245 EMBL-EBI Protein of unknown function DUF229 1.0E-126
Pfam IPR004245 EMBL-EBI Protein of unknown function DUF229 1.8E-13
Pfam IPR004245 EMBL-EBI Protein of unknown function DUF229 5.7E-41
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510172.1 1 12-34
R03G8.1 1 12-34
GENEFINDER00000031821 1 12-34
Sequence
Target Sequence 
>C. ELEGANS:177479_AT
gatttcctgaatttcttcatcaagcatcggaaaaagttccaacccgctgaaaagttttct
gccataactccattacaaattcctggtgagaaaggacaatcgcatcttagaaaccaacca
cctttcaaccgcaattgtcaaactatgcctatacctttcgaatattgcatttgtcaattc
aataaaacttcagtacctataaattctaccatttccatggaaatcggtgaaaaagtagct
gagaatgtaaataaacttctacaaattaacaatttcacctctgaatgtatctctatggtg
tttgaaaggacggaatctctgctgcaatacaaccagaaactgggaaattctaccatatac
acagtcatcgctcagatgaaaaaaccaagtgaagctaaatttaaagcaactgtgaaaatc
actgaaggaaatatcaagattgtgagcaaagtcgaacgtgtcgattcctatggaaaaact
gctgattgcatagaatcggaaacacatcggccaatctgttactgtaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTCCTGAATTTCTTCATCAAGC 95 429 1198 Antisense
GTTTTCTGCCATAACTCCATTACAA 672 447 1251 Antisense
ATCGCATCTTAGAAACCAACCACCT 491 35 1296 Antisense
CCACCTTTCAACCGCAATTGTCAAA 245 273 1315 Antisense
GTCAAACTATGCCTATACCTTTCGA 272 465 1334 Antisense
TTCACCTCTGAATGTATCTCTATGG 364 687 1471 Antisense
GAAAGGACGGAATCTCTGCTGCAAT 450 361 1501 Antisense
TACCATATACACAGTCATCGCTCAG 406 651 1548 Antisense
TCGAACGTGTCGATTCCTATGGAAA 694 599 1649 Antisense
GAATCGGAAACACATCGGCCAATCT 657 317 1690 Antisense
CATCGGCCAATCTGTTACTGTAAAG 608 211 1702 Antisense
Sequence Source Affymetrix Proprietary Database