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[177476_at]

Description Y60A9.3 /REP_DB=WormBase Gene ID /WP=CE22669 /TR=Q9U1Y2 /GB=CAB60410.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 3.3
(-2.7)
A 		3.4
(-2.6)
A 		3
(-3)
A 		8.4
(3)
A 		5
B 2.5
(-0.1)
A 		3.9
(3)
A 		1.2
(-3)
A 		3.3
(1.7)
A 		3
C 1.9
(-3)
A 		3.4
(-2.7)
A 		3.5
(-2.7)
A 		33
(3)
A 		31
avr 2.6
(-3) 		3.6
(-2.5) 		2.6
(-3) 		14.9
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 4.9
(-0.6)
A 		1
(-3)
A 		4.5
(-0.9)
A 		2.7
(-2)
A 		2.8
(-1.9)
A 		10.8
(3)
A 		10
B 2.2
(-2.7)
A 		1.1
(-3)
A 		2.2
(-2.7)
A 		23.7
(3)
A 		2.2
(-2.7)
A 		3
(-2.5)
A 		23
C 5.5
(3)
A 		1.6
(-3)
A 		2
(-2.4)
A 		3.1
(-0.7)
A 		2.5
(-1.6)
A 		5.1
(2.4)
A 		4
avr 4.2
(-0.9) 		1.2
(-3) 		2.9
(-1.8) 		9.8
(3) 		2.5
(-2.1) 		6.3
(0.6) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.2
(3)
A 		0.7
(-3)
A 		0.8
(-1.8)
A 		1.2
(3)
A 		1
B 0.8
(1.3)
A 		1
(3)
A 		0.3
(-3)
A 		0.7
(0.4)
A 		1
C 0.6
(-3)
A 		1
(-2.5)
A 		1.2
(-2.3)
A 		5.6
(3)
A 		5
avr 0.9
(-2.6) 		0.9
(-2.6) 		0.8
(-3) 		2.5
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.9
(-1.6)
A 		0.4
(-3)
A 		1
(-1.4)
A 		0.7
(-2.2)
A 		0.9
(-1.6)
A 		2.6
(3)
A 		2
B 0.8
(-2.6)
A 		0.4
(-3)
A 		0.5
(-2.9)
A 		6.3
(3)
A 		0.9
(-2.5)
A 		1.1
(-2.3)
A 		6
C 2
(3)
A 		0.5
(-3)
A 		0.5
(-3)
A 		0.6
(-2.6)
A 		0.8
(-1.8)
A 		1.7
(1.8)
A 		2
avr 1.2
(-0.7) 		0.4
(-3) 		0.7
(-2.1) 		2.5
(3) 		0.9
(-1.6) 		1.8
(1) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177476_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17583
Sequence Type Exemplar sequence
Representative Public ID Y60A9.3 NCBI
Target Description Y60A9.3 /REP_DB=WormBase Gene ID /WP=CE22669 /TR=Q9U1Y2 /GB=CAB60410.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077996(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077996 NCBI Caenorhabditis elegans Y60A9.3 (Y60A9.3) mRNA, complete cds. 11/11 None
SNAP00000029944 ENSEMBL cdna:SNAP chromosome:CEL140:X:14383170:14383781:1 11/11 None
GENEFINDER00000029948 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14383170:14383781:1 11/11 None
Y60A9.3 ENSEMBL cdna:known chromosome:CEL140:X:14383170:14383781:1 gene:Y60A9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14383169-14383781(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y60A9.3
Entrez Gene 190441 Entrez gene
SwissProt Q9U1Y2 EMBL-EBI
WormBase CE22669 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60410 Hypothetical protein Y60A9.3 [Caenorhabditis elegans] ref|NP_510397.1| Y60A9.3 [Caenorhabditis elegans] 5.0E-99
blast CAB05147 Hypothetical protein C35D6.4 [Caenorhabditis elegans] ref|NP_502949.1| C35D6.4 [Caenorhabditis elegans] 9.0E-85
blast CAB05193 Hypothetical protein F38C2.7 [Caenorhabditis elegans] ref|NP_502930.1| F38C2.7 [Caenorhabditis elegans] 3.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 8.6E-6
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 1.4E-12
Sequence
Target Sequence 
>C. ELEGANS:177476_AT
atgtcacttgaagccagcaaccaagaaaactatttatccagttttcttctgaaatgtgct
ttcccagctggaactgcctctccaacgctttctccgccatcttcttccggatcttataaa
aaacacgaattctctccttttgtgcaacaaaatgaaactaagcccaaattagcttcttat
caatcattggccaaccaagatccctgcacaattccagatgagcttcaccaagaaatgaag
agatcgaaaaagaaagaagaagcattcaagacatccctatacgggtttcacagaagaggc
caaaaatgtgcttatggtgaaaaatgcaaatttgctcacagtgtacatgagctccgcttc
ccacaaaccaaaagaaaccaccgtaactataaaactgtactttgcaataaattctcaaca
actgggcattgcaagtacggaatcaggtgtcagttcatccacagatctatggactcaact
tcttcaaatcaatcaaatgaaacagaaaatgttacaattgatctgaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCACTTGAAGCCAGCAACCAAG 61 49 13 Antisense
GCAACCAAGAAAACTATTTATCCAG 258 319 29 Antisense
CCATCTTCTTCCGGATCTTATAAAA 262 271 109 Antisense
AAAACACGAATTCTCTCCTTTTGTG 689 129 132 Antisense
AATTCTCTCCTTTTGTGCAACAAAA 650 175 140 Antisense
GAAACTAAGCCCAAATTAGCTTCTT 493 355 166 Antisense
GCCCAAATTAGCTTCTTATCAATCA 660 285 174 Antisense
AAGACATCCCTATACGGGTTTCACA 311 127 280 Antisense
TCCCTATACGGGTTTCACAGAAGAG 482 595 286 Antisense
AACTGTACTTTGCAATAAATTCTCA 238 143 405 Antisense
GAAAATGTTACAATTGATCTGAATG 580 353 517 Antisense
Sequence Source Affymetrix Proprietary Database