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[177475_at]

Description K05C4.7 /REP_DB=WormBase Gene ID /WP=CE19975 /TR=Q9XUU5 /GB=CAB04573.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 77      4grp_highest_8_8 > 22      4grp_high_8_8 > 15      6grp_highest_nonorm > 93      6grp_total > 77      4grp_total > 01      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 358
1 2 3 4 range
A 341.3
(-2.2)
P 		313.5
(-3)
P 		351.2
(-1.9)
P 		517.3
(3)
P 		204
B 284.9
(-3)
P 		321.3
(-2.2)
P 		429.4
(0.2)
P 		552
(3)
P 		267
C 371.9
(-2.2)
P 		330.7
(-3)
P 		344.2
(-2.7)
P 		642.8
(3)
P 		312
avr 332.7
(-2.7) 		321.8
(-3) 		374.9
(-1.7) 		570.7
(3) 		249

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 514
1 2 3 4 5 6 range
A 308.2
(-1.6)
P 		250.1
(-3)
P 		314.3
(-1.5)
P 		313.2
(-1.5)
P 		352.4
(-0.6)
P 		504.9
(3)
P 		255
B 303.8
(-2.7)
P 		285.8
(-3)
P 		352
(-2)
P 		308.6
(-2.7)
P 		448.5
(-0.5)
P 		682.8
(3)
P 		397
C 317.8
(-2.1)
P 		289.1
(-2.4)
P 		238.6
(-3)
P 		318.5
(-2.1)
P 		392.5
(-1.2)
P 		752.6
(3)
P 		514
avr 309.9
(-2.4) 		275
(-3) 		301.6
(-2.6) 		313.4
(-2.4) 		397.8
(-1) 		646.8
(3) 		372
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 124.3
(3)
P 		68
(-3)
P 		91.8
(-0.5)
P 		75.7
(-2.2)
P 		56
B 90.8
(-1.2)
P 		79.4
(-3)
P 		99.5
(0.2)
P 		117.6
(3)
P 		38
C 123.1
(3)
P 		95.1
(-3)
P 		120
(2.3)
P 		108.4
(-0.1)
P 		28
avr 112.7
(3) 		80.8
(-3) 		103.8
(1.3) 		100.6
(0.7) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 56.8
(-3)
P 		88.9
(-0.1)
P 		68.4
(-1.9)
P 		79.4
(-0.9)
P 		106.3
(1.5)
P 		122.9
(3)
P 		66
B 105.7
(-2.2)
P 		95.1
(-2.5)
P 		85.5
(-2.9)
P 		81.7
(-3)
P 		182.2
(0.5)
P 		254.6
(3)
P 		173
C 117.8
(-1.2)
P 		88.2
(-2.1)
P 		60.7
(-3)
P 		64
(-2.9)
P 		127
(-0.9)
P 		251.9
(3)
P 		191
avr 93.4
(-2) 		90.7
(-2.2) 		71.5
(-3) 		75
(-2.8) 		138.5
(-0.1) 		209.8
(3) 		138
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177475_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.420
Sequence Type Exemplar sequence
Representative Public ID K05C4.7 NCBI
Target Description K05C4.7 /REP_DB=WormBase Gene ID /WP=CE19975 /TR=Q9XUU5 /GB=CAB04573.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061164(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061164 NCBI Caenorhabditis elegans K05C4.7 (K05C4.7) mRNA, complete cds. 11/11 None
SNAP00000018540 ENSEMBL cdna:SNAP chromosome:CEL140:I:14745821:14750640:1 10/11 None
GENEFINDER00000018552 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14745821:14750640:1 11/11 None
K05C4.7 ENSEMBL cdna:known chromosome:CEL140:I:14745821:14746853:1 gene:K05C4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14745751-14746671(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K05C4.7
Entrez Gene 173337 Entrez gene
SwissProt Q9XUU5 EMBL-EBI
WormBase CE19975 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04572 Hypothetical protein K05C4.6 [Caenorhabditis elegans] ref|NP_493566.1| HuMPback (dorsal lumps) family member (hmp-2) [Caenorhabditis elegans] gb|AAB94552.1| HMP-2 [Caenorhabditis elegans] 0.0
blast CAE72561 Hypothetical protein CBG19745 [Caenorhabditis briggsae] 0.0
blast CAB04573 Hypothetical protein K05C4.7 [Caenorhabditis elegans] ref|NP_493565.1| K05C4.7 [Caenorhabditis elegans] 1.0E-159
blast CAB04573 Hypothetical protein K05C4.7 [Caenorhabditis elegans] ref|NP_493565.1| K05C4.7 [Caenorhabditis elegans] 1.0E-157
blast CAB04573 Hypothetical protein K05C4.7 [Caenorhabditis elegans] ref|NP_493565.1| K05C4.7 [Caenorhabditis elegans] 1.0E-152
blast CAE72562 Hypothetical protein CBG19746 [Caenorhabditis briggsae] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR000225 EMBL-EBI Armadillo 5.5E-7
Pfam IPR000225 EMBL-EBI Armadillo 5.5E-7
Sequence
Target Sequence 
>C. ELEGANS:177475_AT
ataacttggtccttgtctcgagtaggattcgagtagtgaagaattcgctggatgccaaaa
gagccgagaaagagcctctagccgatgcgatcaaagagctcgacaagggcggaactcttc
accgaaaattcgttggaagaaagtcaaagcagattattatggaattcgatgcggaggaat
tcgatgaaacgaagaagctgtcagttgagagaggccttctgaagaaaaaaggagtaatca
gtgtatatataaccgagcagaactcaattccacgcgccgtgctccgcacaatcccgacaa
tcgaagccaaggacattgcgcagtccgttttcgccgccgccggattcgagtacgtcgcgc
agttagtgaaagtgaacggaatcgacgagaaattcgagttttacgcgtcagagatgggca
aaatcacggaaaactcgaaagattaccccgaatatttggatgatgatgtgcttcacgtgg
atccggcaagttgtgtgataactaatgagatggctgcccatggaagtggtcaagagggcg
gatggttcagttcgatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAACTTGGTCCTTGTCTCGAGTAG 494 25 296 Antisense
GAGAAAGAGCCTCTAGCCGATGCGA 85 393 361 Antisense
GGCGGAACTCTTCACCGAAAATTCG 422 531 403 Antisense
CCGAGCAGAACTCAATTCCACGCGC 595 263 548 Antisense
TCCGCACAATCCCGACAATCGAAGC 573 595 578 Antisense
AAGGACATTGCGCAGTCCGTTTTCG 677 159 604 Antisense
GATTCGAGTACGTCGCGCAGTTAGT 519 431 638 Antisense
GAAATTCGAGTTTTACGCGTCAGAG 642 363 684 Antisense
GATGATGTGCTTCACGTGGATCCGG 681 409 757 Antisense
GATGGCTGCCCATGGAAGTGGTCAA 691 405 804 Antisense
AGAGGGCGGATGGTTCAGTTCGATC 215 67 828 Antisense
Sequence Source Affymetrix Proprietary Database