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[177473_at]

Description T23G4.2 /REP_DB=WormBase Gene ID /WP=CE16454 /TR=O18126 /GB=CAB05284.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 24.6
(-3)
A 		47.9
(-1.1)
A 		25.7
(-2.9)
A 		98.5
(3)
P 		74
B 52.9
(3)
A 		23.2
(-1.3)
A 		11.8
(-3)
A 		37.8
(0.8)
A 		41
C 32.7
(-1.8)
A 		27.4
(-2)
A 		4.2
(-3)
A 		145
(3)
P 		141
avr 36.7
(-1.3) 		32.8
(-1.6) 		13.9
(-3) 		93.8
(3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 15.5
(-1.7)
A 		4
(-2.9)
A 		61.3
(3)
M 		58.6
(2.7)
P 		2.6
(-3)
A 		30.5
(-0.1)
A 		59
B 30.7
(-0.6)
A 		38.9
(0.3)
A 		62
(3)
P 		9.7
(-3)
A 		11.9
(-2.7)
A 		29.2
(-0.8)
A 		52
C 19.8
(-2.1)
A 		24.3
(-1.2)
A 		15.5
(-3)
A 		31.6
(0.3)
A 		44.9
(3)
A 		24.8
(-1.1)
A 		29
avr 22
(-2.5) 		22.4
(-2.4) 		46.3
(3) 		33.3
(0.1) 		19.8
(-3) 		28.2
(-1.1) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 8.9
(-1.3)
A 		10.4
(-0.1)
A 		6.7
(-3)
A 		14.4
(3)
P 		8
B 16.9
(3)
A 		5.7
(-1.7)
A 		2.7
(-3)
A 		8.1
(-0.7)
A 		14
C 10.8
(-0.6)
A 		7.9
(-1.3)
A 		1.5
(-3)
A 		24.5
(3)
P 		23
avr 12.2
(1.3) 		8
(-0.8) 		3.6
(-3) 		15.7
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2.9
(-2.1)
A 		1.4
(-2.7)
A 		13.4
(2.4)
M 		14.9
(3)
P 		0.8
(-3)
A 		7.4
(-0.2)
A 		14
B 10.7
(0.9)
A 		12.9
(2)
A 		15
(3)
P 		2.6
(-3)
A 		4.8
(-1.9)
A 		10.9
(1)
A 		12
C 7.4
(-1)
A 		7.4
(-1)
A 		3.9
(-3)
A 		6.4
(-1.6)
A 		14.5
(3)
A 		8.3
(-0.5)
A 		11
avr 7
(-2.6) 		7.2
(-2.3) 		10.8
(3) 		8
(-1.1) 		6.7
(-3) 		8.9
(0.2) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177473_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9880
Sequence Type Exemplar sequence
Representative Public ID T23G4.2 NCBI
Target Description T23G4.2 /REP_DB=WormBase Gene ID /WP=CE16454 /TR=O18126 /GB=CAB05284.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070245(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070245 NCBI Caenorhabditis elegans T23G4.2 (T23G4.2) mRNA, complete cds. 11/11 None
SNAP00000014426 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13688293:13689242:-1 9/11 None
GENEFINDER00000014430 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13688293:13689242:-1 9/11 None
T23G4.2 ENSEMBL cdna:known chromosome:CEL140:IV:13688293:13688764:-1 gene:T23G4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13688298-13688770(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T23G4.2
Entrez Gene 188813 Entrez gene
SwissProt O18126 EMBL-EBI
WormBase CE16454 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4176 ATP-dependent peptidase activity inferred from electronic annotation QuickGO AmiGO
4252 serine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05284 Hypothetical protein T23G4.2 [Caenorhabditis elegans] ref|NP_502646.1| T23G4.2 [Caenorhabditis elegans] 4.0E-64
blast CAB05284 Hypothetical protein T23G4.2 [Caenorhabditis elegans] ref|NP_502646.1| T23G4.2 [Caenorhabditis elegans] 4.0E-60
blast CAB05284 Hypothetical protein T23G4.2 [Caenorhabditis elegans] ref|NP_502646.1| T23G4.2 [Caenorhabditis elegans] 5.0E-60
Sequence
Target Sequence 
>C. ELEGANS:177473_AT
gataatttatgtttcagcgtgccgacatgcagtatgttcggagactgttttggatgttct
tggaaacgtctcggagaaaatgaaaaaaggcatagaattggcgagatcagtggcacacct
ggagctctgccaagacaagatcacattccaaagacgatacgtggcgatcgagtttgatga
ggatgagctccttgacggaaaaagttcaattctggctgttgctgtatcgatttactttgc
tatagtcgggctacgtgttcccagtgatttgatgatcactggttctctaaatctgaaggg
aacagtgatcccaatatccggtctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATAATTTATGTTTCAGCGTGCCGA 537 421 15 Antisense
AGCGTGCCGACATGCAGTATGTTCG 630 77 30 Antisense
GGATGTTCTTGGAAACGTCTCGGAG 229 515 66 Antisense
TGGCGAGATCAGTGGCACACCTGGA 129 543 113 Antisense
CACCTGGAGCTCTGCCAAGACAAGA 426 201 130 Antisense
AGTTCAATTCTGGCTGTTGCTGTAT 659 63 217 Antisense
GTTGCTGTATCGATTTACTTTGCTA 631 439 232 Antisense
ACTTTGCTATAGTCGGGCTACGTGT 462 101 248 Antisense
GCTACGTGTTCCCAGTGATTTGATG 451 303 264 Antisense
GATGATCACTGGTTCTCTAAATCTG 257 411 285 Antisense
AACAGTGATCCCAATATCCGGTCTT 344 137 315 Antisense
Sequence Source Affymetrix Proprietary Database