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[177472_at]

Description W01A8.5 /REP_DB=WormBase Gene ID /WP=CE06535 /TR=Q23096 /GB=CAA95849.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 95      6grp_total > 86      4grp_total > 01      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 281.4
(-3)
P 		302.2
(-2.4)
M 		381.4
(0.1)
P 		475.8
(3)
P 		194
B 356.7
(-1.6)
P 		421.9
(1.6)
M 		328.4
(-3)
M 		449.8
(3)
P 		121
C 382.9
(3)
P 		293.9
(-3)
A 		357.9
(1.3)
P 		348.9
(0.7)
A 		89
avr 340.3
(-2.9) 		339.3
(-3) 		355.9
(-1.8) 		424.8
(3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 654
1 2 3 4 5 6 range
A 313.2
(-3)
A 		372.6
(-2.4)
P 		505.6
(-1.2)
P 		599.3
(-0.3)
P 		674.9
(0.4)
P 		944.3
(3)
P 		631
B 303
(-3)
P 		320.5
(-2.8)
P 		544.4
(-0.6)
P 		582.5
(-0.3)
P 		688.5
(0.8)
P 		918.1
(3)
P 		615
C 290.4
(-3)
P 		382.9
(-2.1)
P 		521.2
(-0.7)
P 		614.3
(0.3)
P 		507
(-0.8)
P 		884
(3)
P 		594
avr 302.2
(-3) 		358.7
(-2.4) 		523.7
(-0.8) 		598.7
(-0.1) 		623.5
(0.1) 		915.5
(3) 		613
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 102.5
(3)
P 		65.6
(-3)
M 		99.7
(2.5)
P 		69.7
(-2.3)
P 		37
B 113.8
(3)
P 		104.2
(1.5)
M 		76.1
(-3)
M 		95.9
(0.2)
P 		38
C 126.7
(3)
P 		84.5
(-0.7)
A 		124.7
(2.8)
P 		58.8
(-3)
A 		68
avr 114.3
(3) 		84.8
(-1.5) 		100.2
(0.9) 		74.8
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 285
1 2 3 4 5 6 range
A 57.7
(-3)
A 		132.5
(-0.4)
P 		110.1
(-1.2)
P 		152
(0.3)
P 		203.7
(2.1)
P 		229.9
(3)
P 		172
B 105.4
(-3)
P 		106.7
(-3)
P 		132.2
(-2.3)
P 		154.3
(-1.8)
P 		279.7
(1.4)
P 		342.4
(3)
P 		237
C 107.7
(-3)
P 		116.8
(-2.7)
P 		132.7
(-2.2)
P 		123.5
(-2.5)
P 		164.1
(-1.2)
P 		295.9
(3)
P 		188
avr 90.3
(-3) 		118.7
(-2.1) 		125
(-2) 		143.3
(-1.4) 		215.8
(0.8) 		289.4
(3) 		199
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177472_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.553
Sequence Type Exemplar sequence
Representative Public ID W01A8.5 NCBI
Target Description W01A8.5 /REP_DB=WormBase Gene ID /WP=CE06535 /TR=Q23096 /GB=CAA95849.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059601(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059601 NCBI Caenorhabditis elegans W01A8.5 (W01A8.5) mRNA, complete cds. 11/11 None
SNAP00000018612 ENSEMBL cdna:SNAP chromosome:CEL140:I:7077574:7078718:1 11/11 None
GENEFINDER00000018614 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7077574:7078718:1 11/11 None
W01A8.5 ENSEMBL cdna:known chromosome:CEL140:I:7077574:7078792:1 gene:W01A8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7077504-7078649(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W01A8.5
Entrez Gene 172439 Entrez gene
SwissProt Q23096 EMBL-EBI
WormBase CE06535 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA95849 Hypothetical protein W01A8.5 [Caenorhabditis elegans] ref|NP_492002.1| W01A8.5 [Caenorhabditis elegans] 1.0E-157
blast CAE65705 Hypothetical protein CBG10780 [Caenorhabditis briggsae] 2.0E-92
Sequence
Target Sequence 
>C. ELEGANS:177472_AT
ggacatcataatatcactcctccaccattttgccaagtggatccaaatgacgactggagc
agtatcatgggaaaaatagtcgatcatcatcatggatcaatcaacaagaccctaccttct
cttagagatacttatgagacactcttcgagaatctcgctctagaatctaaaactcacgaa
aatgcggtggtgaccaaacttctcaccgcaaaagctacaagaactgactctcaaaatata
agatggccagtcatttacagattcatgaaagcatgtgccacattggaagagcaaatgcca
gcgctcaatgaacttgaagcggcagttgtctccaaagtactagacactatcgaaaccgaa
gctacgacaactccagatactgagaaatctattcttgccggtattttcagtgaatgtcaa
caaggcaattaccgcttctgtgagcaagactatcctccgaacgttatggcggcagttcaa
ctgttcgtggatccactccgtacccgttttcatgcgatccctgaagttgcatctgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACATCATAATATCACTCCTCCAC 363 525 358 Antisense
AGACCCTACCTTCTCTTAGAGATAC 41 65 464 Antisense
CGGTGGTGACCAAACTTCTCACCGC 182 243 542 Antisense
GCAAATGCCAGCGCTCAATGAACTT 610 317 648 Antisense
AAGCGGCAGTTGTCTCCAAAGTACT 13 151 674 Antisense
GAAGCTACGACAACTCCAGATACTG 207 343 715 Antisense
GAAATCTATTCTTGCCGGTATTTTC 228 363 741 Antisense
CAAGGCAATTACCGCTTCTGTGAGC 429 183 778 Antisense
AGACTATCCTCCGAACGTTATGGCG 32 69 804 Antisense
AGTTCAACTGTTCGTGGATCCACTC 655 63 831 Antisense
TGCGATCCCTGAAGTTGCATCTGAA 375 581 870 Antisense
Sequence Source Affymetrix Proprietary Database