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[177471_at]

Description ZK899.3 /REP_DB=WormBase Gene ID /WP=CE01120 /TR=Q23663 /GB=CAA85500.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 18      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 11
(-2.4)
A 		28.5
(-1.2)
A 		1.9
(-3)
A 		91.6
(3)
A 		90
B 40.4
(1.4)
A 		49.5
(3)
A 		19.4
(-2.4)
A 		16.2
(-3)
A 		33
C 5.9
(-3)
A 		13.3
(-2.3)
A 		43
(0.3)
A 		73.1
(3)
A 		67
avr 19.1
(-3) 		30.4
(-1.4) 		21.4
(-2.7) 		60.3
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 61.6
(3)
A 		2.9
(-3)
A 		8
(-2.5)
A 		11.2
(-2.1)
A 		2.7
(-3)
A 		30.5
(-0.2)
A 		59
B 41.5
(3)
A 		5.8
(-2.3)
A 		2.1
(-2.9)
A 		1.3
(-3)
A 		3.1
(-2.7)
A 		2.7
(-2.8)
A 		40
C 9.1
(-1.3)
A 		7.9
(-1.6)
A 		26.1
(2.6)
A 		27.8
(3)
A 		1.9
(-3)
A 		3.1
(-2.7)
A 		26
avr 37.4
(3) 		5.5
(-2.5) 		12.1
(-1.4) 		13.4
(-1.1) 		2.6
(-3) 		12.1
(-1.4) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 4
(-1.4)
A 		6.2
(-0.3)
A 		0.5
(-3)
A 		13.4
(3)
A 		13
B 12.9
(3)
A 		12.2
(2.6)
A 		4.5
(-2.3)
A 		3.4
(-3)
A 		10
C 2
(-3)
A 		3.8
(-2.2)
A 		15
(3)
A 		12.3
(1.8)
A 		13
avr 6.3
(-3) 		7.4
(-1.1) 		6.7
(-2.3) 		9.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 11.4
(3)
A 		1
(-2.9)
A 		1.7
(-2.5)
A 		2.8
(-1.9)
A 		0.8
(-3)
A 		7.4
(0.7)
A 		11
B 14.4
(3)
A 		1.9
(-2.3)
A 		0.5
(-2.9)
A 		0.3
(-3)
A 		1.2
(-2.6)
A 		1
(-2.7)
A 		14
C 3.4
(-0.2)
A 		2.4
(-1.2)
A 		6.7
(3)
A 		5.6
(1.9)
A 		0.6
(-3)
A 		1.1
(-2.5)
A 		6
avr 9.7
(3) 		1.8
(-2.4) 		3
(-1.6) 		2.9
(-1.6) 		0.9
(-3) 		3.2
(-1.4) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177471_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16588
Sequence Type Exemplar sequence
Representative Public ID ZK899.3 NCBI
Target Description ZK899.3 /REP_DB=WormBase Gene ID /WP=CE01120 /TR=Q23663 /GB=CAA85500.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077189(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077189 NCBI Caenorhabditis elegans ZK899.3 (ZK899.3) mRNA, complete cds. 11/11 None
GENEFINDER00000025058 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9453667:9454590:1 11/11 None
SNAP00000025040 ENSEMBL cdna:SNAP chromosome:CEL140:X:9453889:9454590:1 11/11 None
ZK899.3 ENSEMBL cdna:known chromosome:CEL140:X:9453889:9454590:1 gene:ZK899.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9453888-9454590(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK899.3
Entrez Gene 191454 Entrez gene
SwissProt Q23663 EMBL-EBI
WormBase CE01120 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA85500 Hypothetical protein ZK899.3 [Caenorhabditis elegans] ref|NP_509590.1| ZK899.3 [Caenorhabditis elegans] 1.0E-84
blast CAE69816 Hypothetical protein CBG16132 [Caenorhabditis briggsae] 3.0E-21
blast CAE69816 Hypothetical protein CBG16132 [Caenorhabditis briggsae] 4.0E-21
Sequence
Target Sequence 
>C. ELEGANS:177471_AT
ttcacggccatcaactaacctggcaagaattattgcttcgattaacctacaagaagacga
tgtggtccttactccggacccattggcttttaatggtcaaacaacaatgcctatgttcga
tttcaatcaaattccagctccgaatttggaagacagtgttgacagaaaggatgatgaaga
agagtttttcacggcctcacctggttccagcaattcaggttcaatggtggatgttccact
tactgtagaactgctcacttctgacagcaaatcaactactccgagacccagaatagcgtg
ggctatcccaaatgcggcacatcataaaggtagcagcaaacatcagaagcagtcaaagtc
ttctcggactttattgaaaaaggaggaacgttcgaataatcgtttgacaaatgttccagc
tgcagctacgtttgaacatgacatcacgtcagatggattagataactgcccggagcgtga
acg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCACGGCCATCAACTAACCTGGCA 530 685 18 Antisense
AGACGATGTGGTCCTTACTCCGGAC 644 69 72 Antisense
ACAATGCCTATGTTCGATTTCAATC 71 113 121 Antisense
ATTTCAATCAAATTCCAGCTCCGAA 680 15 137 Antisense
CCTCACCTGGTTCCAGCAATTCAGG 317 265 212 Antisense
GTAGAACTGCTCACTTCTGACAGCA 354 457 262 Antisense
GACAGCAAATCAACTACTCCGAGAC 352 369 280 Antisense
AGCGTGGGCTATCCCAAATGCGGCA 499 81 312 Antisense
GAAGCAGTCAAAGTCTTCTCGGACT 193 341 363 Antisense
CCAGCTGCAGCTACGTTTGAACATG 532 271 433 Antisense
TAGATAACTGCCCGGAGCGTGAACG 535 651 476 Antisense
Sequence Source Affymetrix Proprietary Database