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[177470_at]

Description T18D3.8 /REP_DB=WormBase Gene ID /WP=CE03669 /TR=Q22546 /GB=CAA92198.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 91      4grp_highest_8_8 > 36      4grp_high_8_8 > 0      6grp_highest_nonorm > 90      6grp_total > 93      4grp_total > 07      6grp_high1_sub > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 236.2
(3)
P 		117.6
(-3)
P 		204.1
(1.4)
P 		233.7
(2.9)
P 		119
B 200.8
(2.2)
P 		144.2
(-3)
P 		209.2
(3)
P 		167
(-0.9)
P 		65
C 167
(-3)
P 		250
(3)
P 		181.4
(-2)
P 		183.5
(-1.8)
P 		83
avr 201.3
(3) 		170.6
(-3) 		198.2
(2.4) 		194.7
(1.7) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 183
1 2 3 4 5 6 range
A 137.1
(-1.6)
P 		181.5
(2.6)
P 		172.2
(1.7)
P 		156.1
(0.2)
P 		185.2
(3)
P 		123
(-3)
P 		62
B 156.2
(-2.3)
P 		142.7
(-2.8)
P 		201.5
(-0.7)
P 		187.9
(-1.2)
P 		305.9
(3)
P 		136.4
(-3)
P 		170
C 169.4
(-0)
P 		193.8
(1.7)
P 		140.8
(-2)
P 		152.1
(-1.2)
P 		126.9
(-3)
P 		213
(3)
P 		86
avr 154.2
(-3) 		172.7
(-0.9) 		171.5
(-1) 		165.4
(-1.7) 		206
(3) 		157.5
(-2.6) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 86
(3)
P 		25.5
(-3)
P 		53.4
(-0.2)
P 		34.2
(-2.1)
P 		61
B 64
(3)
P 		35.6
(-3)
P 		48.5
(-0.3)
P 		35.6
(-3)
P 		28
C 55.3
(0.6)
P 		71.9
(3)
P 		63.2
(1.7)
P 		30.9
(-3)
P 		41
avr 68.4
(3) 		44.3
(-1.2) 		55
(0.7) 		33.6
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 25.3
(-3)
P 		64.6
(3)
P 		37.5
(-1.1)
P 		39.6
(-0.8)
P 		55.9
(1.7)
P 		29.9
(-2.3)
P 		39
B 54.3
(-2.5)
P 		47.5
(-3)
P 		48.9
(-2.9)
P 		49.8
(-2.8)
P 		124.3
(3)
P 		50.8
(-2.7)
P 		77
C 62.8
(1.7)
P 		59.1
(1.2)
P 		35.8
(-2.2)
P 		30.6
(-3)
P 		41.1
(-1.5)
P 		71.3
(3)
P 		41
avr 47.5
(-1.7) 		57.1
(0) 		40.7
(-2.9) 		40
(-3) 		73.8
(3) 		50.7
(-1.1) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177470_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15983
Sequence Type Exemplar sequence
Representative Public ID T18D3.8 NCBI
Target Description T18D3.8 /REP_DB=WormBase Gene ID /WP=CE03669 /TR=Q22546 /GB=CAA92198.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077684(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077684 NCBI Caenorhabditis elegans T18D3.8 (T18D3.8) mRNA, complete cds. 11/11 None
T18D3.8 ENSEMBL cdna:known chromosome:CEL140:X:12437405:12438216:1 gene:T18D3.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020726 6/11 Cross Hyb Matching Probes None
GENEFINDER00000020727 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12437404-12438216(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T18D3.8
Entrez Gene 188578 Entrez gene
SwissProt Q22546 EMBL-EBI
WormBase CE03669 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92205 Hypothetical protein T18D3.8 [Caenorhabditis elegans] emb|CAA92198.1| Hypothetical protein T18D3.8 [Caenorhabditis elegans] ref|NP_510085.1| T18D3.8 [Caenorhabditis elegans] 1.0E-64
blast CAE57249 Hypothetical protein CBG00127 [Caenorhabditis briggsae] 1.0E-27
Sequence
Target Sequence 
>C. ELEGANS:177470_AT
gagtactacttccaatgaagcatctgtgattgaggtcgttcctccaaatgcaaactgtga
caagccgaagaagaaattccaagttgttccggttccaggagagtttacacgtggcagatg
gaaagtgattgataccagatttgggtcggcaatgggagaatttggaaattatcctccaga
agacgagtacaagatgatcgtaacaagcaaaaacaatgtgatcaccgtccgaaagaaatt
ccctcggccgacaacagtcacctctgctccaattctcggagcagaagaggcggacagcat
tcgtgtgctacaaaaaagtcagccgcgacgaactctttgctttcgtttctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTACTACTTCCAATGAAGCATCT 443 399 15 Antisense
AGCATCTGTGATTGAGGTCGTTCCT 206 79 33 Antisense
GTCGTTCCTCCAAATGCAAACTGTG 314 473 49 Antisense
TTCCAAGTTGTTCCGGTTCCAGGAG 56 697 91 Antisense
GGAGAGTTTACACGTGGCAGATGGA 253 519 112 Antisense
GATACCAGATTTGGGTCGGCAATGG 420 425 145 Antisense
GATCACCGTCCGAAAGAAATTCCCT 474 419 234 Antisense
TCACCTCTGCTCCAATTCTCGGAGC 95 627 272 Antisense
GAGGCGGACAGCATTCGTGTGCTAC 482 405 301 Antisense
AAAAGTCAGCCGCGACGAACTCTTT 186 129 328 Antisense
GACGAACTCTTTGCTTTCGTTTCTT 627 379 341 Antisense
Sequence Source Affymetrix Proprietary Database