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[177467_at]

Description ZC53.1 /REP_DB=WormBase Gene ID /WP=CE07583 /TR=Q23377 /GB=AAB52616.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 18      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 2.7
(-2.8)
A 		4.2
(-2.2)
A 		2.1
(-3)
A 		17.4
(3)
A 		15
B 2.8
(-3)
A 		28.5
(0.8)
A 		4
(-2.8)
A 		42.9
(3)
A 		40
C 3.2
(-2.8)
A 		2.1
(-3)
A 		2.2
(-3)
A 		38.1
(3)
A 		36
avr 2.9
(-3) 		11.6
(-1.2) 		2.8
(-3) 		32.8
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 2.7
(-2.1)
A 		1.8
(-3)
A 		4
(-0.7)
A 		3.2
(-1.6)
A 		7.6
(3)
A 		3.4
(-1.3)
A 		6
B 5.1
(-1.4)
A 		2.7
(-2.8)
A 		5.1
(-1.4)
A 		12
(2.7)
A 		2.4
(-3)
A 		12.5
(3)
A 		10
C 2.2
(-2.9)
A 		8.3
(1.7)
A 		2
(-3)
A 		3.6
(-1.8)
A 		3.5
(-1.9)
A 		10.1
(3)
A 		8
avr 3.3
(-3) 		4.3
(-1.9) 		3.7
(-2.6) 		6.3
(0.3) 		4.5
(-1.7) 		8.7
(3) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1
(-1.7)
A 		0.9
(-2.1)
A 		0.6
(-3)
A 		2.5
(3)
A 		2
B 0.9
(-3)
A 		7
(1.5)
A 		0.9
(-3)
A 		9.1
(3)
A 		8
C 1.1
(-2.5)
A 		0.6
(-3)
A 		0.8
(-2.8)
A 		6.4
(3)
A 		6
avr 1
(-2.8) 		2.8
(-0.7) 		0.8
(-3) 		6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.5
(-3)
A 		0.6
(-2.7)
A 		0.9
(-1.7)
A 		0.8
(-2)
A 		2.3
(3)
A 		0.8
(-2)
A 		2
B 1.8
(-1.6)
A 		0.9
(-3)
A 		1.2
(-2.5)
A 		3.2
(0.6)
A 		1
(-2.8)
A 		4.7
(3)
A 		4
C 0.8
(-2.4)
A 		2.5
(1.1)
A 		0.5
(-3)
A 		0.7
(-2.6)
A 		1.1
(-1.8)
A 		3.4
(3)
A 		3
avr 1
(-2.7) 		1.3
(-1.9) 		0.9
(-3) 		1.6
(-1) 		1.5
(-1.3) 		3
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177467_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18241
Sequence Type Exemplar sequence
Representative Public ID ZC53.1 NCBI
Target Description ZC53.1 /REP_DB=WormBase Gene ID /WP=CE07583 /TR=Q23377 /GB=AAB52616.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075948(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075948 NCBI Caenorhabditis elegans ZC53.1 (ZC53.1) mRNA, complete cds. 11/11 None
SNAP00000009999 ENSEMBL cdna:SNAP chromosome:CEL140:X:1911395:1913343:-1 11/11 None
GENEFINDER00000010010 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1911395:1913343:-1 11/11 None
ZC53.1 ENSEMBL cdna:known chromosome:CEL140:X:1911395:1913250:-1 gene:ZC53.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1911394-1913250(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC53.1
Entrez Gene 191066 Entrez gene
SwissProt Q23377 EMBL-EBI
WormBase CE35813 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52616 Hypothetical protein ZC53.1 [Caenorhabditis elegans] ref|NP_508349.2| ZC53.1 [Caenorhabditis elegans] 0.0
blast AAB52616 Hypothetical protein ZC53.1 [Caenorhabditis elegans] ref|NP_508349.2| ZC53.1 [Caenorhabditis elegans] 1.0E-139
Sequence
Target Sequence 
>C. ELEGANS:177467_AT
ggcccgaagccaaagcattcaactcatgagacacctgaagacgccaaaccggaggcattc
acatctgttaaaccaccaacatcatctggaaaccagtcaatacgtgctccaatgaacgaa
ccgtcctacgaacggattcaggcattggttcgagacgtttatgctcgacgcaaaagtgga
gctgtgaacgatgatttgaccgtctcactcgatggcttccgcatggtcatgtttagcaga
tcaccagcaacggcactgcagattctgactgcttcggactacttgcgtatccgaggaaga
tcacttagtcaaagagatcaacaagatgctcgcctcttccagcaattggcgcgaataatc
cgagaagagagaccaatgcagttgatcagtgatgttttcttcttaatctgccgagttggc
gaccaggaataccggcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCCCGAAGCCAAAGCATTCAACTC 185 543 748 Antisense
ATGAGACACCTGAAGACGCCAAACC 561 45 773 Antisense
AAACCGGAGGCATTCACATCTGTTA 20 127 793 Antisense
GAAACCAGTCAATACGTGCTCCAAT 445 359 836 Antisense
GTGCTCCAATGAACGAACCGTCCTA 430 479 851 Antisense
CGATGATTTGACCGTCTCACTCGAT 272 249 936 Antisense
TTAGCAGATCACCAGCAACGGCACT 297 669 980 Antisense
GCAACGGCACTGCAGATTCTGACTG 34 317 994 Antisense
TGACTGCTTCGGACTACTTGCGTAT 313 569 1013 Antisense
TTTCTTCTTAATCTGCCGAGTTGGC 118 671 1143 Antisense
AGTTGGCGACCAGGAATACCGGCGT 705 61 1161 Antisense
Sequence Source Affymetrix Proprietary Database