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[177466_at]

Description W04G3.7 /REP_DB=WormBase Gene ID /WP=CE03791 /TR=Q23168 /GB=CAA92029.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 08      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 21.4
(-3)
A 		47.3
(1.9)
A 		28
(-1.8)
A 		53.4
(3)
A 		32
B 9.6
(-3)
A 		29.8
(3)
A 		23.9
(1.2)
A 		18.4
(-0.4)
A 		20
C 48.6
(0)
A 		9.4
(-3)
A 		47.9
(-0)
A 		87.7
(3)
A 		78
avr 26.5
(-3) 		28.8
(-2.5) 		33.3
(-1.5) 		53.2
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 6.9
(-2.8)
A 		5.9
(-3)
A 		6.2
(-2.9)
A 		7.7
(-2.6)
A 		30.7
(3)
A 		6.2
(-2.9)
A 		25
B 7.6
(-2.6)
A 		5.8
(-3)
A 		17.7
(-0.6)
A 		8.6
(-2.4)
A 		35
(3)
A 		16.5
(-0.8)
A 		29
C 7.3
(-2.8)
A 		61.3
(3)
A 		5.9
(-3)
A 		28.6
(-0.5)
A 		6.5
(-2.9)
A 		17.9
(-1.7)
A 		55
avr 7.3
(-3) 		24.3
(3) 		9.9
(-2.1) 		15
(-0.3) 		24.1
(2.9) 		13.5
(-0.8) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 7.8
(-2)
A 		10.3
(3)
A 		7.3
(-3)
A 		7.8
(-2)
A 		3
B 3
(-3)
A 		7.4
(3)
A 		5.5
(0.4)
A 		3.9
(-1.8)
A 		4
C 16.1
(2.7)
A 		2.7
(-3)
A 		16.7
(3)
A 		14.8
(2.2)
A 		14
avr 9
(1.4) 		6.8
(-3) 		9.8
(3) 		8.8
(1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1.3
(-3)
A 		2.1
(-2.4)
A 		1.3
(-3)
A 		2
(-2.5)
A 		9.3
(3)
A 		1.5
(-2.9)
A 		8
B 2.6
(-2.7)
A 		1.9
(-3)
A 		4.3
(-1.8)
A 		2.3
(-2.8)
A 		14.2
(3)
A 		6.2
(-0.9)
A 		12
C 2.7
(-2.6)
A 		18.7
(3)
A 		1.5
(-3)
A 		5.7
(-1.5)
A 		2.1
(-2.8)
A 		6
(-1.4)
A 		17
avr 2.2
(-3) 		7.6
(2.1) 		2.4
(-2.8) 		3.3
(-2) 		8.5
(3) 		4.6
(-0.7) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177466_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16005
Sequence Type Exemplar sequence
Representative Public ID W04G3.7 NCBI
Target Description W04G3.7 /REP_DB=WormBase Gene ID /WP=CE03791 /TR=Q23168 /GB=CAA92029.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077455(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077455 NCBI Caenorhabditis elegans W04G3.7 (W04G3.7) mRNA, complete cds. 11/11 None
SNAP00000042828 ENSEMBL cdna:SNAP chromosome:CEL140:X:11084140:11085168:-1 9/11 None
GENEFINDER00000042833 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11084140:11085168:-1 9/11 None
W04G3.7 ENSEMBL cdna:known chromosome:CEL140:X:11084140:11085497:-1 gene:W04G3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11084139-11085497(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W04G3.7
Entrez Gene 189196 Entrez gene
SwissProt Q23168 EMBL-EBI
WormBase CE03791 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92029 Hypothetical protein W04G3.7 [Caenorhabditis elegans] ref|NP_509856.1| W04G3.7 [Caenorhabditis elegans] 1.0E-126
blast CAA92029 Hypothetical protein W04G3.7 [Caenorhabditis elegans] ref|NP_509856.1| W04G3.7 [Caenorhabditis elegans] 1.0E-85
blast CAE70706 Hypothetical protein CBG17445 [Caenorhabditis briggsae] 3.0E-37
blast CAE70706 Hypothetical protein CBG17445 [Caenorhabditis briggsae] 6.0E-37
Sequence
Target Sequence 
>C. ELEGANS:177466_AT
gttagcagccgctgtacttttctcttcacgatgagaaaactcagtatactatttgcactt
ttatctgtattaactgttcaatgttctggatattacgatcacgctaaatggcattgtgga
attaacaaactgacggaaacaatatcagagtggctagccaaacctttcgactaccatggt
gtgaatcagtgctgccaggctcacgacgatcactattatcatcatacactgtcgagagaa
gacgctgacagagttttctgtgactgtttggaagagaacgctaactggtttgttcgaaat
ctcatagagccaattttctgcaagtctgtgcaaacctacgcaatttggcagaaattcaca
aaccagaattcgtggtcttctcaatttacaataaaaccaccaacaacaactactacaacc
gagtctccgctcaattactatctagagcttcttcatcaacgagaaagagagtttgaattg
agaaaagaacaggaagccaggcggcgtgaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTAGCAGCCGCTGTACTTTTCTCT 384 445 250 Antisense
GCTGTACTTTTCTCTTCACGATGAG 164 295 260 Antisense
TAGCCAAACCTTTCGACTACCATGG 235 651 404 Antisense
TGAATCAGTGCTGCCAGGCTCACGA 614 575 431 Antisense
GACGATCACTATTATCATCATACAC 709 377 454 Antisense
GAGCCAATTTTCTGCAAGTCTGTGC 196 385 556 Antisense
GCAAGTCTGTGCAAACCTACGCAAT 438 321 569 Antisense
GAATTCGTGGTCTTCTCAATTTACA 534 323 615 Antisense
AGTCTCCGCTCAATTACTATCTAGA 646 61 671 Antisense
ACTATCTAGAGCTTCTTCATCAACG 658 101 686 Antisense
GAACAGGAAGCCAGGCGGCGTGAAG 423 349 736 Antisense
Sequence Source Affymetrix Proprietary Database