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[177465_at]

Description F15A4.9 /REP_DB=WormBase Gene ID /WP=CE15846 /TR=O17812 /GB=CAB02941.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 43      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 16.5
(-0.4)
A 		29.1
(3)
A 		7.3
(-2.9)
A 		7.1
(-3)
A 		22
B 5.6
(-0.1)
A 		6.3
(0.7)
A 		8.4
(3)
A 		3
(-3)
A 		5
C 7.4
(-0.3)
A 		11.2
(3)
A 		4.3
(-3)
A 		9.9
(1.9)
A 		7
avr 9.8
(-0.9) 		15.5
(3) 		6.7
(-3) 		6.7
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 3.9
(-2.9)
A 		9.9
(-2)
A 		5.4
(-2.7)
A 		5.2
(-2.7)
A 		44
(3)
A 		3.3
(-3)
A 		41
B 5.9
(-0.9)
A 		5.6
(-1.2)
A 		3.4
(-3)
A 		7.9
(0.8)
A 		10.6
(3)
A 		4.6
(-2)
A 		7
C 9.5
(1.6)
A 		5.7
(-2.5)
A 		5.2
(-3)
A 		10.8
(3)
A 		10.4
(2.6)
A 		6.5
(-1.6)
A 		6
avr 6.4
(-2.4) 		7.1
(-2.2) 		4.7
(-3) 		8
(-1.8) 		21.7
(3) 		4.8
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 6
(2.7)
A 		6.3
(3)
A 		1.9
(-2)
A 		1
(-3)
A 		5
B 1.8
(2.1)
A 		1.6
(1.3)
A 		2
(3)
A 		0.6
(-3)
A 		1
C 2.5
(0.5)
A 		3.2
(3)
A 		1.5
(-3)
A 		1.7
(-2.3)
A 		2
avr 3.4
(2.3) 		3.7
(3) 		1.8
(-1.4) 		1.1
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.7
(-3)
A 		3.5
(-1.7)
A 		1.2
(-2.8)
A 		1.3
(-2.7)
A 		13.3
(3)
A 		0.8
(-3)
A 		13
B 2.1
(-0.8)
A 		1.9
(-1.1)
A 		0.8
(-3)
A 		2.1
(-0.8)
A 		4.3
(3)
A 		1.7
(-1.5)
A 		4
C 3.5
(3)
A 		1.7
(-1.9)
A 		1.3
(-3)
A 		2.2
(-0.5)
A 		3.4
(2.7)
A 		2.2
(-0.5)
A 		2
avr 2.1
(-2) 		2.4
(-1.7) 		1.1
(-3) 		1.9
(-2.2) 		7
(3) 		1.6
(-2.5) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177465_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2793
Sequence Type Exemplar sequence
Representative Public ID F15A4.9 NCBI
Target Description F15A4.9 /REP_DB=WormBase Gene ID /WP=CE15846 /TR=O17812 /GB=CAB02941.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064260(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064260 NCBI Caenorhabditis elegans F15A4.9 (F15A4.9) mRNA, complete cds. 11/11 None
SNAP00000042553 ENSEMBL cdna:SNAP chromosome:CEL140:II:12479493:12480813:-1 11/11 None
GENEFINDER00000042559 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12479493:12480813:-1 11/11 None
F15A4.9 ENSEMBL cdna:known chromosome:CEL140:II:12479493:12480813:-1 gene:F15A4.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12479489-12480810(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F15A4.9
Entrez Gene 184515 Entrez gene
SwissProt O17812 EMBL-EBI
WormBase CE15846 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02941 Hypothetical protein F15A4.9 [Caenorhabditis elegans] ref|NP_496661.1| F15A4.9 [Caenorhabditis elegans] 0.0
blast AAF99936 Hypothetical protein F35F10.11 [Caenorhabditis elegans] ref|NP_503916.1| F35F10.11 [Caenorhabditis elegans] 2.0E-16
blast CAA90144 Hypothetical protein ZK938.4 [Caenorhabditis elegans] ref|NP_496119.1| ZK938.4 [Caenorhabditis elegans] 4.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR000698 EMBL-EBI Arrestin 8.3E-25
Pfam IPR000698 EMBL-EBI Arrestin 3.7E-45
Sequence
Target Sequence 
>C. ELEGANS:177465_AT
gacctttcgggttcattcgattctacatcaaagtgcacatggatcgcccacacgcgcttg
atcaatgtgttaagaaggagttcctggtcactcagaaaccaacggtagtgtcgaagaagc
atctgggcccggagcatatcattagatattgccagaagttgaattgcaacagaggagaaa
tctattttgaggctcaactctcgaaccgtatcatcttctttgacgatccgatctccttga
tcattaagatcaaaaactgcagctccagaaccatcaagaaaatctcgcttgaagccttcc
aaagaatcgagtactactccaccacatcggcctgccgaaagactcactcagttctcatcg
gaaaaactggaaaatccgagctgaaaatccgcaacgacgagatcgccatctcgacgttct
ccatgaagttcaaggagccggccaccccttcattcgcctcggagctgattcaggtctctt
atgttctgctggtcaacttgttcaccgacggattctgggctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCTTTCGGGTTCATTCGATTCTA 488 379 326 Antisense
CTCAACTCTCGAACCGTATCATCTT 513 227 518 Antisense
GTATCATCTTCTTTGACGATCCGAT 538 453 533 Antisense
GAATCGAGTACTACTCCACCACATC 183 329 629 Antisense
CGAAAGACTCACTCAGTTCTCATCG 59 251 661 Antisense
AAATCCGCAACGACGAGATCGCCAT 214 119 710 Antisense
ATCTCGACGTTCTCCATGAAGTTCA 692 29 733 Antisense
ATTCGCCTCGGAGCTGATTCAGGTC 408 9 777 Antisense
TCAGGTCTCTTATGTTCTGCTGGTC 385 623 795 Antisense
TCTGCTGGTCAACTTGTTCACCGAC 386 609 810 Antisense
TGTTCACCGACGGATTCTGGGCTGC 589 559 824 Antisense
Sequence Source Affymetrix Proprietary Database