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[177462_at]

Description T19C4.1 /REP_DB=WormBase Gene ID /WP=CE06465 /TR=Q22570 /GB=CAA99917.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 11      6grp_highest_nonorm > 41      6grp_total > 23      4grp_total > 60      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 869
1 2 3 4 range
A 846.2
(3)
P 		758.1
(2.4)
P 		817.9
(2.8)
P 		13.2
(-3)
A 		833
B 800.8
(3)
P 		634.1
(1.7)
P 		774.8
(2.8)
P 		7.6
(-3)
A 		793
C 862.9
(2.9)
P 		677.3
(1.5)
P 		876.5
(3)
P 		59.5
(-3)
A 		817
avr 836.6
(3) 		689.8
(1.9) 		823.1
(2.9) 		26.8
(-3) 		810

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 869
1 2 3 4 5 6 range
A 962.9
(2.8)
P 		998.5
(3)
P 		645.8
(0.6)
P 		781.4
(1.5)
P 		482.1
(-0.6)
P 		130.6
(-3)
P 		868
B 910.9
(3)
P 		764
(1.9)
P 		770.5
(1.9)
P 		660.2
(1.1)
P 		327.2
(-1.5)
P 		129.2
(-3)
P 		782
C 977.2
(3)
P 		800.3
(1.7)
P 		915.9
(2.5)
P 		688.9
(0.8)
P 		350.3
(-1.7)
P 		182
(-3)
P 		795
avr 950.3
(3) 		854.3
(2.3) 		777.4
(1.7) 		710.2
(1.2) 		386.5
(-1.2) 		147.3
(-3) 		803
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 307
1 2 3 4 range
A 308.1
(3)
P 		164.6
(0.2)
P 		213.8
(1.2)
P 		1.9
(-3)
A 		306
B 255.4
(3)
P 		156.6
(0.7)
P 		179.5
(1.2)
P 		1.6
(-3)
A 		254
C 285.6
(2.6)
P 		194.7
(0.8)
P 		305.5
(3)
P 		10
(-3)
A 		296
avr 283
(3) 		172
(0.6) 		232.9
(1.9) 		4.5
(-3) 		279

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 330
1 2 3 4 5 6 range
A 177.5
(-0.3)
P 		355.1
(3)
P 		140.6
(-1)
P 		198.2
(0.1)
P 		145.5
(-0.9)
P 		31.8
(-3)
P 		323
B 316.9
(3)
P 		254.3
(1.6)
P 		187.1
(0.1)
P 		174.9
(-0.2)
P 		133
(-1.1)
P 		48.2
(-3)
P 		269
C 362.2
(3)
P 		244.2
(0.7)
P 		233.1
(0.4)
P 		138.5
(-1.5)
P 		113.3
(-2)
P 		60.9
(-3)
P 		301
avr 285.5
(3) 		284.5
(3) 		186.9
(0.5) 		170.5
(0.1) 		130.6
(-0.9) 		47
(-3) 		239
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177462_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13442
Sequence Type Exemplar sequence
Representative Public ID T19C4.1 NCBI
Target Description T19C4.1 /REP_DB=WormBase Gene ID /WP=CE06465 /TR=Q22570 /GB=CAA99917.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073434(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073434 NCBI Caenorhabditis elegans T19C4.1 (T19C4.1) mRNA, complete cds. 11/11 None
SNAP00000015935 ENSEMBL cdna:SNAP chromosome:CEL140:V:11152295:11153832:1 11/11 None
GENEFINDER00000015947 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11152295:11153832:1 11/11 None
T19C4.1 ENSEMBL cdna:known chromosome:CEL140:V:11152295:11154333:1 gene:T19C4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11152294-11153832(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T19C4.1
Entrez Gene 188590 Entrez gene
SwissProt Q22570 EMBL-EBI
WormBase CE06465 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99917 Hypothetical protein T19C4.1 [Caenorhabditis elegans] ref|NP_505835.1| T19C4.1 [Caenorhabditis elegans] 0.0
blast CAE75179 Hypothetical protein CBG23119 [Caenorhabditis briggsae] 1.0E-173
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505835.1 4 255-277,287-309,330-349,364-386
T19C4.1 4 255-277,287-309,330-349,364-386
SNAP00000015935 4 255-277,287-309,330-349,364-386
GENEFINDER00000015947 4 255-277,287-309,330-349,364-386
Sequence
Target Sequence 
>C. ELEGANS:177462_AT
tgggtcatccagttccattatctcaaatgggagcatttgtgccaccaatgcttgaacaaa
agccatcaccgcgagcagttaccgctcagcttgcaattagaacaccttacctcaactgga
atatgattagtattgtgtgttgtttacaggtgatggcttgccttggaatcttcttagtag
gagtttcacgaatcttttacggtgccctttgggctattggaattgaaataatttttgcga
cggttgcattattcccatcactggctggtatttatgcagttaagaaaggcagctattctg
cagcgatcttctgttttactgcaaatgcgatggagaacgtggttgccgttgtgccattcc
tttttggtcttttcccagtttttccatacatctttcctaaagctgatggaaaactatttg
tttctgataatgagccaattcttcttgatctgttacttagctttctggtaattctgcaaa
caattttggccttctacatgtcagttcttggatgcaaagcagggggtgccgttatgagtt
cag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGGTCATCCAGTTCCATTATCTCA 697 553 665 Antisense
CAGTTACCGCTCAGCTTGCAATTAG 219 207 740 Antisense
ATTAGAACACCTTACCTCAACTGGA 704 11 760 Antisense
ATGGCTTGCCTTGGAATCTTCTTAG 484 51 817 Antisense
CACGAATCTTTTACGGTGCCCTTTG 292 199 851 Antisense
TGCGACGGTTGCATTATTCCCATCA 225 583 900 Antisense
CAGCTATTCTGCAGCGATCTTCTGT 607 203 954 Antisense
GGAGAACGTGGTTGCCGTTGTGCCA 41 519 996 Antisense
TTTTCCCAGTTTTTCCATACATCTT 483 675 1034 Antisense
AATTTTGGCCTTCTACATGTCAGTT 511 175 1146 Antisense
GCAGGGGGTGCCGTTATGAGTTCAG 294 309 1183 Antisense
Sequence Source Affymetrix Proprietary Database