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[177461_at]

Description F21D9.1 /REP_DB=WormBase Gene ID /WP=CE18627 /TR=Q9XV73 /GB=CAB04160.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 13      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 6.8
(-0.4)
A 		5.2
(-2.2)
A 		4.5
(-3)
A 		9.9
(3)
A 		5
B 3.6
(3)
A 		2.6
(-3)
A 		3.2
(0.6)
A 		2.7
(-2.4)
A 		1
C 4.4
(1.1)
A 		3.1
(-2)
A 		2.7
(-3)
A 		5.2
(3)
A 		3
avr 4.9
(0.5) 		3.6
(-2.8) 		3.5
(-3) 		5.9
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 2.9
(-2.3)
A 		2.3
(-3)
A 		4.7
(-0.4)
A 		5.5
(0.5)
A 		7.8
(3)
A 		6.3
(1.4)
A 		6
B 1.6
(-3)
A 		4
(-0.8)
A 		2.9
(-1.8)
A 		8.1
(3)
A 		4.3
(-0.5)
A 		2.6
(-2.1)
A 		7
C 2.6
(-3)
A 		3.3
(-2.3)
A 		4.5
(-1.2)
A 		9
(3)
A 		6
(0.2)
A 		2.6
(-3)
A 		6
avr 2.4
(-3) 		3.2
(-2.1) 		4
(-1.1) 		7.5
(3) 		6
(1.2) 		3.8
(-1.4) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 2.5
(3)
A 		1.1
(-3)
A 		1.2
(-2.6)
A 		1.5
(-1.3)
A 		1
B 1.2
(3)
A 		0.6
(-3)
A 		0.7
(-2)
A 		0.6
(-3)
A 		1
C 1.4
(3)
A 		0.9
(-3)
A 		0.9
(-3)
A 		0.9
(-3)
A 		0
avr 1.7
(3) 		0.9
(-3) 		0.9
(-3) 		1
(-2.3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.5
(-3)
A 		0.8
(-2.1)
A 		1
(-1.4)
A 		1.4
(-0.2)
A 		2.4
(3)
A 		1.5
(0.2)
A 		2
B 0.5
(-3)
A 		1.3
(0)
A 		0.7
(-2.3)
A 		2.1
(3)
A 		1.7
(1.5)
A 		1
(-1.1)
A 		2
C 1
(-2.4)
A 		1
(-2.4)
A 		1.1
(-1.8)
A 		1.8
(2.4)
A 		1.9
(3)
A 		0.9
(-3)
A 		1
avr 0.7
(-3) 		1
(-1.6) 		0.9
(-2.1) 		1.8
(2.1) 		2
(3) 		1.1
(-1.2) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177461_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14406
Sequence Type Exemplar sequence
Representative Public ID F21D9.1 NCBI
Target Description F21D9.1 /REP_DB=WormBase Gene ID /WP=CE18627 /TR=Q9XV73 /GB=CAB04160.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075347(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075347 NCBI Caenorhabditis elegans F21D9.1 (F21D9.1) mRNA, complete cds. 11/11 None
F21D9.1 ENSEMBL cdna:known chromosome:CEL140:V:19267170:19272234:1 gene:F21D9.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022441 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19267169-19272234(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F21D9.1
Entrez Gene 184772 Entrez gene
SwissProt Q9XV73 EMBL-EBI
WormBase CE18627 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04160 Hypothetical protein F21D9.1 [Caenorhabditis elegans] ref|NP_507748.1| F21D9.1 [Caenorhabditis elegans] 0.0
blast AAA83507 Hypothetical protein F19C7.3 [Caenorhabditis elegans] ref|NP_500594.1| F19C7.3 [Caenorhabditis elegans] 1.0E-103
blast AAF39964 Hypothetical protein T02H6.5 [Caenorhabditis elegans] ref|NP_493792.1| T02H6.5 [Caenorhabditis elegans] 1.0E-101
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.3E-8
Sequence
Target Sequence 
>C. ELEGANS:177461_AT
gaactattttcaatcgaccacgtggatttggtaattgataggagtaaactttttcggttt
cacacaacactagaacatccattatttcgaaaatgtgattatgtggagattgttaaaagt
tattcgtatttgacgaacaatgatatgcaatttgtattgaacaatttcaatttgaaaaat
ggaatgctggttaaatgtttgttttggaaggatttcaaactggaattgctgttcaaaatt
cctcgattggatattttcaatgcacaacagttcacactagatgtattaataaaaatggat
tgtaaggtcatcaaattatggaaacatgaactcggaccacaccatatcaatcaatttatt
catttgtggatggcgggagcaatgcccaatttacgaagacttcgctgcaacgacttttgt
agcccttggcagatggatgaaattctccgtggcgttgaacattcgaagtgggatggggaa
cgtcgagcaaggattttttgcgatggaattgaacgaattaactgtggaattggagacgat
atcgttcgaaatgatggagtacttgcaactgtgtttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTATTTTCAATCGACCACGTGG 491 349 490 Antisense
CTTTTTCGGTTTCACACAACACTAG 614 213 538 Antisense
AATTGCTGTTCAAAATTCCTCGATT 176 179 713 Antisense
TGGAAACATGAACTCGGACCACACC 669 545 808 Antisense
CGGACCACACCATATCAATCAATTT 528 243 822 Antisense
GTGGATGGCGGGAGCAATGCCCAAT 6 491 855 Antisense
GAAGACTTCGCTGCAACGACTTTTG 473 339 884 Antisense
ACGACTTTTGTAGCCCTTGGCAGAT 689 89 899 Antisense
AATTCTCCGTGGCGTTGAACATTCG 17 173 930 Antisense
GAAGTGGGATGGGGAACGTCGAGCA 491 335 954 Antisense
GATGGAGTACTTGCAACTGTGTTTT 600 407 1042 Antisense
Sequence Source Affymetrix Proprietary Database