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[177459_at]

Description B0198.2 /REP_DB=WormBase Gene ID /WP=CE02930 /TR=Q17442 /GB=CAA91528.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 80      6grp_total > 04      4grp_total > 30      6grp_highest_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 245
1 2 3 4 range
A 411.4
(3)
P 		326
(-0.5)
P 		264.9
(-3)
P 		407
(2.8)
P 		147
B 467.4
(3)
P 		324.7
(-0.5)
P 		222.4
(-3)
P 		300.8
(-1.1)
P 		245
C 461.3
(3)
P 		226.9
(-3)
P 		248.8
(-2.4)
P 		415.9
(1.8)
P 		234
avr 446.7
(3) 		292.5
(-1.6) 		245.4
(-3) 		374.6
(0.9) 		201

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 253
1 2 3 4 5 6 range
A 369.9
(3)
P 		292
(1.1)
P 		145.2
(-2.3)
P 		280
(0.9)
P 		174.9
(-1.6)
P 		117.4
(-3)
P 		253
B 315.6
(3)
P 		253.3
(0.5)
P 		199
(-1.8)
P 		195.4
(-1.9)
P 		223.3
(-0.8)
P 		168.5
(-3)
P 		147
C 266.3
(0.5)
P 		351.6
(3)
P 		271
(0.6)
P 		209.9
(-1.2)
P 		162.5
(-2.5)
P 		147
(-3)
P 		205
avr 317.3
(3) 		299
(2.4) 		205.1
(-0.9) 		228.4
(-0.1) 		186.9
(-1.5) 		144.3
(-3) 		173
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 149.8
(3)
P 		70.8
(-2.3)
P 		69.2
(-2.4)
P 		59.6
(-3)
P 		90
B 149.1
(3)
P 		80.2
(-1.2)
P 		51.5
(-3)
P 		64.1
(-2.2)
P 		98
C 152.7
(3)
P 		65.2
(-3)
P 		86.7
(-1.5)
P 		70.1
(-2.7)
P 		88
avr 150.5
(3) 		72.1
(-2.5) 		69.1
(-2.7) 		64.6
(-3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 68.2
(0.2)
P 		103.8
(3)
P 		31.6
(-2.8)
P 		71
(0.4)
P 		52.8
(-1.1)
P 		28.6
(-3)
P 		75
B 109.8
(3)
P 		84.3
(0.5)
P 		48.3
(-3)
P 		51.8
(-2.7)
P 		90.7
(1.1)
P 		62.8
(-1.6)
P 		62
C 98.7
(2.2)
P 		107.3
(3)
P 		69
(-0.5)
P 		42.2
(-3)
P 		52.6
(-2)
P 		49.2
(-2.4)
P 		65
avr 92.2
(2.3) 		98.5
(3) 		49.6
(-2.7) 		55
(-2.1) 		65.4
(-0.8) 		46.9
(-3) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177459_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16175
Sequence Type Exemplar sequence
Representative Public ID B0198.2 NCBI
Target Description B0198.2 /REP_DB=WormBase Gene ID /WP=CE02930 /TR=Q17442 /GB=CAA91528.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077612(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077612 NCBI Caenorhabditis elegans B0198.2 (B0198.2) mRNA, complete cds. 11/11 None
SNAP00000037171 ENSEMBL cdna:SNAP chromosome:CEL140:X:12029748:12031418:1 10/11 None
GENEFINDER00000037176 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12029748:12031418:1 10/11 None
B0198.2 ENSEMBL cdna:known chromosome:CEL140:X:12029748:12031538:1 gene:B0198.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12029747-12031169(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0198.2
Entrez Gene 181375 Entrez gene
SwissProt Q17442 EMBL-EBI
WormBase CE35377 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91528 Hypothetical protein B0198.2 [Caenorhabditis elegans] ref|NP_510013.2| B0198.2 [Caenorhabditis elegans] 1.0E-119
blast CAE69865 Hypothetical protein CBG16196 [Caenorhabditis briggsae] 1.0E-114
blast CAA91528 Hypothetical protein B0198.2 [Caenorhabditis elegans] ref|NP_510013.2| B0198.2 [Caenorhabditis elegans] 1.0E-107
blast CAE69865 Hypothetical protein CBG16196 [Caenorhabditis briggsae] 3.0E-91
Sequence
Target Sequence 
>C. ELEGANS:177459_AT
aaccagctccgagtaggtatcccgaaccgttacggccacagacggttaatcaaatgcgga
tagaacacgaaccaaagtgtaatggttctgggtcgtcacctgccagttttgtacagtata
acaacaacaacgcgcagtctccaataggatatcgacctccaatgcagtttattcacagcc
ccgtttctgaaaatgggattcctagaatggtgcacacaggaggaagattaccacggagtt
caataggttgtataccaccaaggcaagctgaaagaccatctccagagcaatgcttgatat
actcacaatacaacgcatcgttgaataaattaccgaaccacgacgatcgatattacgctc
tacctcgacatatgaacaatcacaaaaactcatcatcaccacgtcggagtccccgacctt
caatatataacacttattcaaactactcatcgaacccatctaaccattctggccattcca
atcattctggaaactctcattccggagaacaatccatagcattaagtgatgtgagtgttc
cctgtcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCAGCTCCGAGTAGGTATCCCGA 50 149 221 Antisense
GTGTAATGGTTCTGGGTCGTCACCT 487 485 297 Antisense
TCGTCACCTGCCAGTTTTGTACAGT 241 605 313 Antisense
ACAACGCGCAGTCTCCAATAGGATA 419 113 347 Antisense
GATATCGACCTCCAATGCAGTTTAT 564 425 368 Antisense
TTATTCACAGCCCCGTTTCTGAAAA 446 679 389 Antisense
TTACGCTCTACCTCGACATATGAAC 246 681 573 Antisense
AGTCCCCGACCTTCAATATATAACA 586 59 628 Antisense
CATCGAACCCATCTAACCATTCTGG 4 211 668 Antisense
CATTCTGGCCATTCCAATCATTCTG 232 217 685 Antisense
AGTGATGTGAGTGTTCCCTGTCATT 462 57 745 Antisense
Sequence Source Affymetrix Proprietary Database