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[177458_at]

Description C53D6.5 /REP_DB=WormBase Gene ID /WP=CE05490 /TR=Q18811 /GB=CAA94227.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 06      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 41
(-2.5)
A 		35.9
(-3)
A 		88
(2.1)
A 		97.8
(3)
A 		62
B 59
(3)
A 		31.5
(-3)
A 		43.7
(-0.3)
A 		44.7
(-0.1)
A 		28
C 54.4
(-0)
A 		7.2
(-3)
A 		15
(-2.5)
A 		102.9
(3)
A 		96
avr 51.5
(-0.2) 		24.9
(-3) 		48.9
(-0.5) 		81.8
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 54.1
(1.4)
A 		39.3
(-0.1)
A 		50.9
(1.1)
A 		9.4
(-3)
A 		70.5
(3)
A 		22.2
(-1.7)
A 		61
B 31.8
(-0.6)
P 		38.4
(0.2)
A 		12.2
(-3)
A 		61
(3)
A 		40.4
(0.5)
A 		22.3
(-1.8)
A 		49
C 26.7
(-0.6)
A 		54.5
(3)
A 		8.4
(-3)
A 		48.4
(2.2)
A 		33.6
(0.3)
A 		54.3
(3)
A 		46
avr 37.5
(0.4) 		44.1
(2) 		23.8
(-3) 		39.6
(0.9) 		48.2
(3) 		32.9
(-0.8) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 14.9
(-0.2)
A 		7.8
(-3)
A 		23
(3)
A 		14.3
(-0.4)
A 		15
B 18.8
(3)
A 		7.8
(-3)
A 		10.1
(-1.7)
A 		9.5
(-2.1)
A 		11
C 18
(3)
A 		2.1
(-3)
A 		5.2
(-1.8)
A 		17.3
(2.7)
A 		16
avr 17.2
(3) 		5.9
(-3) 		12.8
(0.7) 		13.7
(1.1) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 10
(-0.6)
A 		14
(0.7)
A 		11.1
(-0.2)
A 		2.4
(-3)
A 		21.3
(3)
A 		5.4
(-2)
A 		19
B 11
(0.6)
P 		12.8
(1.4)
A 		3
(-3)
A 		16.2
(2.9)
A 		16.4
(3)
A 		8.3
(-0.6)
A 		13
C 9.9
(-0.1)
A 		16.6
(2.4)
A 		2.1
(-3)
A 		9.7
(-0.2)
A 		10.9
(0.3)
A 		18.2
(3)
A 		16
avr 10.3
(-0.3) 		14.5
(2.1) 		5.4
(-3) 		9.4
(-0.8) 		16.2
(3) 		10.6
(-0.1) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177458_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9897
Sequence Type Exemplar sequence
Representative Public ID C53D6.5 NCBI
Target Description C53D6.5 /REP_DB=WormBase Gene ID /WP=CE05490 /TR=Q18811 /GB=CAA94227.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069168(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069168 NCBI Caenorhabditis elegans C53D6.5 (C53D6.5) mRNA, complete cds. 11/11 None
SNAP00000020667 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9026418:9027576:1 11/11 None
GENEFINDER00000020677 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9024718:9027576:1 11/11 None
C53D6.5 ENSEMBL cdna:known chromosome:CEL140:IV:9026418:9027576:1 gene:C53D6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9026423-9027582(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C53D6.5
Entrez Gene 183760 Entrez gene
SwissProt Q18811 EMBL-EBI
WormBase CE05490 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94227 Hypothetical protein C53D6.5 [Caenorhabditis elegans] ref|NP_501569.1| C53D6.5 [Caenorhabditis elegans] 3.0E-75
blast CAA94227 Hypothetical protein C53D6.5 [Caenorhabditis elegans] ref|NP_501569.1| C53D6.5 [Caenorhabditis elegans] 2.0E-72
blast CAA94227 Hypothetical protein C53D6.5 [Caenorhabditis elegans] ref|NP_501569.1| C53D6.5 [Caenorhabditis elegans] 1.0E-69
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000020677 3 40-62,115-137,144-166
Sequence
Target Sequence 
>C. ELEGANS:177458_AT
gatgcaattgtttcttcattgttggacgcagctccgtatgtgattactgatatatacgat
aacccatcgttcattcgtccgatgccaaactataaaaacaaaatggtttctgttgaagtg
aagaacgacttcgaagagaaattccgacttctctgtgagctgaaatctgttgagaaagaa
acatttgaaaaacaagaagaaaagaaaggtgacgaatatgagaaggagttgaacaaattc
ttccgacagcggactgaaaaattagaaatcgagcagaaactgaaagatccaaaacttgac
aaagccactagtgacgaattgaaaaaacaatggcaggagcgaataaatcgcatcaagaag
tatattgaggcatcagatgacaaattgaaaggatatgataatcacacccagaagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCAATTGTTTCTTCATTGTTGG 285 413 22 Antisense
CTTCATTGTTGGACGCAGCTCCGTA 417 221 35 Antisense
GACGCAGCTCCGTATGTGATTACTG 154 381 46 Antisense
ACGATAACCCATCGTTCATTCGTCC 69 95 77 Antisense
GTTCATTCGTCCGATGCCAAACTAT 299 443 90 Antisense
GACTTCGAAGAGAAATTCCGACTTC 470 371 148 Antisense
CCGACTTCTCTGTGAGCTGAAATCT 515 263 165 Antisense
GTTGAACAAATTCTTCCGACAGCGG 50 437 249 Antisense
AAATTCTTCCGACAGCGGACTGAAA 261 115 256 Antisense
AACTTGACAAAGCCACTAGTGACGA 648 137 314 Antisense
GATATGATAATCACACCCAGAAGAT 378 425 413 Antisense
Sequence Source Affymetrix Proprietary Database