[Home] | [Total List]

[177457_at]

Description C07B5.3 /REP_DB=WormBase Gene ID /WP=CE00893 /TR=Q17776 /GB=CAA86410.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 17      6grp_total > 06      4grp_total > 04      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 837
1 2 3 4 range
A 357.4
(-0.4)
P 		79.3
(-3)
M 		114.8
(-2.7)
A 		720.8
(3)
P 		642
B 247.5
(-2.2)
P 		190.2
(-2.7)
A 		150.8
(-3)
A 		916
(3)
P 		765
C 399.8
(0.1)
P 		172.3
(-2.2)
P 		91.1
(-3)
A 		690.2
(3)
P 		599
avr 334.9
(-1) 		147.3
(-2.7) 		118.9
(-3) 		775.7
(3) 		657

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 244
1 2 3 4 5 6 range
A 294.9
(3)
P 		184.2
(-0.5)
P 		241.2
(1.3)
P 		103.3
(-3)
P 		132.8
(-2.1)
A 		115.3
(-2.6)
P 		192
B 327.1
(3)
P 		204.4
(-0)
P 		83.1
(-3)
P 		102.4
(-2.5)
P 		155.3
(-1.2)
P 		130.3
(-1.8)
P 		244
C 318.8
(3)
P 		214
(0.2)
P 		144.9
(-1.7)
P 		156.8
(-1.4)
P 		98
(-3)
P 		140.7
(-1.8)
P 		221
avr 313.6
(3) 		200.9
(-0.5) 		156.4
(-1.9) 		120.8
(-3) 		128.7
(-2.8) 		128.8
(-2.8) 		193
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 178
1 2 3 4 range
A 130.1
(3)
P 		17.2
(-3)
M 		30
(-2.3)
A 		105.5
(1.7)
P 		113
B 78.9
(-1.4)
P 		47
(-2.5)
A 		34.9
(-3)
A 		195.2
(3)
P 		160
C 132.3
(3)
P 		49.5
(-1.9)
P 		31.7
(-3)
A 		116.4
(2.1)
P 		101
avr 113.8
(1.6) 		37.9
(-2.7) 		32.2
(-3) 		139
(3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 54.4
(1.3)
P 		65.5
(3)
P 		52.5
(1)
P 		26.2
(-3)
P 		40.1
(-0.9)
A 		28.1
(-2.7)
P 		39
B 113.8
(3)
P 		68
(0.1)
P 		20.2
(-3)
P 		27.1
(-2.6)
P 		63.1
(-0.2)
P 		48.6
(-1.2)
P 		94
C 118.2
(3)
P 		65.3
(-0.7)
P 		36.9
(-2.6)
P 		31.5
(-3)
P 		31.7
(-3)
P 		47.1
(-1.9)
P 		87
avr 95.5
(3) 		66.3
(0.4) 		36.5
(-2.3) 		28.3
(-3) 		45
(-1.5) 		41.3
(-1.8) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177457_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16150
Sequence Type Exemplar sequence
Representative Public ID C07B5.3 NCBI
Target Description C07B5.3 /REP_DB=WormBase Gene ID /WP=CE00893 /TR=Q17776 /GB=CAA86410.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077201(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077201 NCBI Caenorhabditis elegans C07B5.3 (C07B5.3) mRNA, complete cds. 11/11 None
SNAP00000005686 ENSEMBL cdna:SNAP chromosome:CEL140:X:9522577:9523256:-1 11/11 None
GENEFINDER00000005692 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9522577:9524476:-1 11/11 None
C07B5.3 ENSEMBL cdna:known chromosome:CEL140:X:9522577:9523105:-1 gene:C07B5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9522576-9523105(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C07B5.3
Entrez Gene 182360 Entrez gene
SwissProt Q17776 EMBL-EBI
WormBase CE00893 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86410 Hypothetical protein C07B5.3 [Caenorhabditis elegans] ref|NP_509602.1| C07B5.3 [Caenorhabditis elegans] 8.0E-54
blast CAA86410 Hypothetical protein C07B5.3 [Caenorhabditis elegans] ref|NP_509602.1| C07B5.3 [Caenorhabditis elegans] 9.0E-54
blast CAA86410 Hypothetical protein C07B5.3 [Caenorhabditis elegans] ref|NP_509602.1| C07B5.3 [Caenorhabditis elegans] 2.0E-53
blast CAE69805 Hypothetical protein CBG16115 [Caenorhabditis briggsae] 2.0E-31
blast CAE69805 Hypothetical protein CBG16115 [Caenorhabditis briggsae] 4.0E-31
blast CAE75129 Hypothetical protein CBG23057 [Caenorhabditis briggsae] 2.0E-12
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000005692 1 73-95
Sequence
Target Sequence 
>C. ELEGANS:177457_AT
gatctcgttcatcaaagcaactattctcgttgggcttgtggcctttctggcttgccaaaa
ctcgcaagtgggagctgcatcatccctaatgccaaacgtgtgtaacgcaggggaggaaac
tgcaatgccgtgcgtatgctgcaagaaggcatgctggtttggaatagccgagatgacaac
ggcttactttggtcacatgcctggagagagaagcgatgcagaggcaaaattcacattggc
catga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTCGTTCATCAAAGCAACTATT 288 419 15 Antisense
GCAACTATTCTCGTTGGGCTTGTGG 625 319 31 Antisense
TTGTGGCCTTTCTGGCTTGCCAAAA 6 703 50 Antisense
GCAAGTGGGAGCTGCATCATCCCTA 268 321 78 Antisense
TCATCCCTAATGCCAAACGTGTGTA 61 621 94 Antisense
AGGGGAGGAAACTGCAATGCCGTGC 482 49 123 Antisense
GCAATGCCGTGCGTATGCTGCAAGA 499 321 136 Antisense
GGCATGCTGGTTTGGAATAGCCGAG 185 535 162 Antisense
GAGATGACAACGGCTTACTTTGGTC 66 395 184 Antisense
TACTTTGGTCACATGCCTGGAGAGA 151 645 199 Antisense
GAGGCAAAATTCACATTGGCCATGA 281 405 235 Antisense
Sequence Source Affymetrix Proprietary Database