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[177456_at]

Description K08F9.4 /REP_DB=WormBase Gene ID /WP=CE11948 /TR=O17941 /GB=CAB03189.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 86      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 92      6grp_total > 77      4grp_total > 38      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 243.9
(3)
P 		145.8
(-1.3)
P 		108
(-3)
P 		197.7
(1)
P 		136
B 278
(3)
P 		174.8
(-2.3)
P 		165.1
(-2.8)
P 		160.5
(-3)
P 		118
C 246.8
(3)
P 		207.4
(0.6)
P 		147.5
(-3)
P 		158.5
(-2.3)
P 		99
avr 256.2
(3) 		176
(-1.1) 		140.2
(-3) 		172.2
(-1.3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 280
1 2 3 4 5 6 range
A 205
(-2.9)
P 		218.2
(-2.6)
P 		202.7
(-3)
P 		261.9
(-1.3)
P 		250.7
(-1.6)
P 		409.4
(3)
P 		207
B 182.1
(-3)
P 		227.6
(-1.9)
P 		255.1
(-1.2)
P 		180
(-3)
P 		326.4
(0.5)
P 		432.8
(3)
P 		253
C 196.2
(-3)
P 		231.1
(-2.2)
P 		223.6
(-2.4)
P 		326
(-0)
P 		210.6
(-2.7)
P 		459.5
(3)
P 		263
avr 194.4
(-3) 		225.6
(-2.2) 		227.1
(-2.2) 		256
(-1.5) 		262.6
(-1.3) 		433.9
(3) 		240
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 88.8
(3)
P 		31.7
(-2.7)
P 		28.2
(-3)
P 		28.9
(-2.9)
P 		61
B 88.6
(3)
P 		43.2
(-2)
P 		38.3
(-2.5)
P 		34.2
(-3)
P 		54
C 81.7
(3)
P 		59.6
(0.6)
P 		51.4
(-0.3)
P 		26.7
(-3)
P 		55
avr 86.4
(3) 		44.8
(-1.4) 		39.3
(-2) 		29.9
(-3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 37.8
(-3)
P 		77.6
(0.9)
P 		44.1
(-2.4)
P 		66.4
(-0.2)
P 		75.7
(0.7)
P 		99.7
(3)
P 		62
B 63.4
(-2.2)
P 		75.8
(-1.5)
P 		61.9
(-2.3)
P 		47.7
(-3)
P 		132.6
(1.5)
P 		161.4
(3)
P 		114
C 72.7
(-2)
P 		70.5
(-2.2)
P 		56.9
(-3)
P 		65.6
(-2.5)
P 		68.2
(-2.3)
P 		153.8
(3)
P 		97
avr 58
(-2.7) 		74.6
(-1.6) 		54.3
(-3) 		59.9
(-2.6) 		92.2
(-0.3) 		138.3
(3) 		84
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177456_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13381
Sequence Type Exemplar sequence
Representative Public ID K08F9.4 NCBI
Target Description K08F9.4 /REP_DB=WormBase Gene ID /WP=CE11948 /TR=O17941 /GB=CAB03189.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074335(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074335 NCBI Caenorhabditis elegans K08F9.4 (K08F9.4) mRNA, complete cds. 11/11 None
K08F9.4 ENSEMBL cdna:known chromosome:CEL140:V:15146650:15148995:1 gene:K08F9.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036432 8/11 Cross Hyb Matching Probes None
GENEFINDER00000036449 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15146706-15148898(+) 98.46 100.0
Public Domain and Genome References
Gene Title
Ensembl K08F9.4
Entrez Gene 180023 Entrez gene
SwissProt O17941 EMBL-EBI
WormBase CE11948 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03189 Hypothetical protein K08F9.4 [Caenorhabditis elegans] emb|CAB05811.1| Hypothetical protein K08F9.4 [Caenorhabditis elegans] ref|NP_506736.1| K08F9.4 [Caenorhabditis elegans] 0.0
blast CAE61095 Hypothetical protein CBG04850 [Caenorhabditis briggsae] 3.0E-82
Sequence
Target Sequence 
>C. ELEGANS:177456_AT
actccatcttgttcacagtagttttcgaggattataacaaagacggtacatgggatccgc
cgacagaaatggagaaatattcaagccaagttgatctcaaaaaagttcgaaaacgcgtgg
aatgcgtaaatgagcgcacaaaacgggcaagagaagtacgaagaatttccgttttgacac
cgaagaggtttaaattgagagaagtgaatgagtcaatgaattcgaatgatgtgcttgaga
tctcctcaattcacaatgaatcgtcaagcaacgcgctgggactcttggacaggacaaatg
acgtcatgactgatctcgatctttccatcaccaacacatcatctcaaattctcggaaacg
agactattctagcacgaggaggaggcgctctggatccaactgacgaagcatcactcaacg
agaccagcacgtcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCCATCTTGTTCACAGTAGTTTT 404 99 1052 Antisense
AAGACGGTACATGGGATCCGCCGAC 413 153 1091 Antisense
GAATTTCCGTTTTGACACCGAAGAG 308 325 1214 Antisense
GAATGATGTGCTTGAGATCTCCTCA 245 331 1275 Antisense
AATCGTCAAGCAACGCGCTGGGACT 127 167 1310 Antisense
GCGCTGGGACTCTTGGACAGGACAA 467 281 1324 Antisense
TGACTGATCTCGATCTTTCCATCAC 186 571 1358 Antisense
CCAACACATCATCTCAAATTCTCGG 135 277 1382 Antisense
GCACGAGGAGGAGGCGCTCTGGATC 701 315 1423 Antisense
GCGCTCTGGATCCAACTGACGAAGC 584 265 1436 Antisense
TCACTCAACGAGACCAGCACGTCAC 395 627 1462 Antisense
Sequence Source Affymetrix Proprietary Database