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[177453_at]

Description T23G4.4 /REP_DB=WormBase Gene ID /WP=CE16456 /TR=O18127 /GB=CAB05286.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 14      4grp_total > 13      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 187
1 2 3 4 range
A 137
(2.9)
P 		61.9
(-2.3)
P 		52.3
(-3)
A 		139.1
(3)
P 		87
B 123.4
(2)
P 		59.2
(-2.5)
A 		52
(-3)
A 		138.5
(3)
P 		87
C 95.9
(-2.1)
P 		79.5
(-2.7)
A 		70.9
(-3)
A 		239.4
(3)
P 		169
avr 118.8
(0.2) 		66.9
(-2.6) 		58.4
(-3) 		172.3
(3) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 126.6
(3)
P 		94.1
(1.1)
A 		79.2
(0.3)
P 		66.8
(-0.4)
A 		29.1
(-2.6)
A 		22.4
(-3)
A 		104
B 91.8
(3)
P 		45.5
(-1.6)
A 		64.1
(0.3)
P 		73.4
(1.2)
A 		47.9
(-1.3)
P 		31.2
(-3)
A 		61
C 78.8
(1)
P 		108.1
(3)
P 		60.8
(-0.3)
A 		61.2
(-0.2)
A 		21.4
(-3)
A 		47.7
(-1.2)
A 		87
avr 99.1
(3) 		82.6
(1.5) 		68
(0.2) 		67.1
(0.1) 		32.8
(-3) 		33.8
(-2.9) 		66
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 49.9
(3)
P 		13.4
(-3)
P 		13.7
(-3)
A 		20.4
(-1.8)
P 		37
B 39.3
(3)
P 		14.6
(-2.4)
A 		12.1
(-3)
A 		29.5
(0.8)
P 		27
C 31.7
(0)
P 		22.9
(-3)
A 		24.7
(-2.4)
A 		40.4
(3)
P 		18
avr 40.3
(3) 		17
(-2.9) 		16.8
(-3) 		30.1
(0.4) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 23.3
(0.8)
P 		33.5
(3)
A 		17.2
(-0.5)
P 		17
(-0.5)
A 		8.8
(-2.3)
A 		5.5
(-3)
A 		28
B 31.9
(3)
P 		15.2
(-1.9)
A 		15.6
(-1.8)
P 		19.4
(-0.7)
A 		19.5
(-0.7)
P 		11.6
(-3)
A 		20
C 29.2
(2.1)
P 		33
(3)
P 		15.5
(-1)
A 		12.3
(-1.8)
A 		6.9
(-3)
A 		16
(-0.9)
A 		26
avr 28.1
(3) 		27.2
(2.7) 		16.1
(-1.2) 		16.2
(-1.2) 		11.7
(-2.8) 		11
(-3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177453_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9306
Sequence Type Exemplar sequence
Representative Public ID T23G4.4 NCBI
Target Description T23G4.4 /REP_DB=WormBase Gene ID /WP=CE16456 /TR=O18127 /GB=CAB05286.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070242(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070242 NCBI Caenorhabditis elegans T23G4.4 (T23G4.4) mRNA, complete cds. 11/11 None
SNAP00000014423 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13676542:13677792:1 11/11 None
GENEFINDER00000014428 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13673773:13680302:1 11/11 None
T23G4.4 ENSEMBL cdna:known chromosome:CEL140:IV:13673773:13677792:1 gene:T23G4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13673778-13677798(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T23G4.4
Entrez Gene 188814 Entrez gene
SwissProt O18127 EMBL-EBI
WormBase CE16456 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05286 Hypothetical protein T23G4.4 [Caenorhabditis elegans] ref|NP_502643.1| T23G4.4 [Caenorhabditis elegans] 0.0
blast AAC48045 Hypothetical protein K09E10.2 [Caenorhabditis elegans] ref|NP_502345.1| K09E10.2 [Caenorhabditis elegans] 0.0
blast AAC48044 Hypothetical protein K09E10.1 [Caenorhabditis elegans] ref|NP_502344.1| K09E10.1 [Caenorhabditis elegans] 0.0
blast CAB05286 Hypothetical protein T23G4.4 [Caenorhabditis elegans] ref|NP_502643.1| T23G4.4 [Caenorhabditis elegans] 1.0E-122
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Pfam IPR003677 EMBL-EBI Protein of unknown function, DUF 148 1.2E-58
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502643.1 10 35-57,83-105,141-163,172-189,199-221,261-278,283-302,309-331,341-358,370-389
T23G4.4 10 35-57,83-105,141-163,172-189,199-221,261-278,283-302,309-331,341-358,370-389
GENEFINDER00000014428 10 35-57,83-105,141-163,172-189,199-221,261-278,283-302,309-331,341-358,370-389
Sequence
Target Sequence 
>C. ELEGANS:177453_AT
gaaaccggctgtgaaccattaacttcccccacggataatgccgcttgtattaagaaattg
ccagaatttgtagaatttattgcggagactcagccagattatgcgtttatgtttacaaga
tttttcgctgccgcaaatccatacaacatcacggaaaacgacctggagcacgacagaact
tatctggaaatgagaagtcaattgagaaaaatgctgccaaatatcaaaaagaagatattt
atattagactctatacccagagttcatccagaacaaattgacactattgcaaaaaatttg
aaaagaaaaaggaaaacaatggaggaaattaataaatccttatacaacccatctggcttt
gaacgtggccgacgtcgtcatgctgaactattggaaaaagagtgtaattcaaaatgcgag
ttaatcgattatttgccagaattttggaacaaaacgatgaacgcatttcaatattttgat
gcacgtggattctcatatttcacttctccatttcacatttctgcacatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACCGGCTGTGAACCATTAACTT 559 349 1504 Antisense
TCCCCCACGGATAATGCCGCTTGTA 234 597 1528 Antisense
GCGGAGACTCAGCCAGATTATGCGT 127 293 1585 Antisense
GTTTACAAGATTTTTCGCTGCCGCA 80 449 1614 Antisense
CTGCCGCAAATCCATACAACATCAC 473 237 1631 Antisense
TCTATACCCAGAGTTCATCCAGAAC 167 615 1753 Antisense
AATCCTTATACAACCCATCTGGCTT 414 167 1838 Antisense
ATCTGGCTTTGAACGTGGCCGACGT 206 33 1854 Antisense
TGGCCGACGTCGTCATGCTGAACTA 277 545 1869 Antisense
GGATTCTCATATTTCACTTCTCCAT 233 509 1990 Antisense
TCTCCATTTCACATTTCTGCACATG 216 611 2008 Antisense
Sequence Source Affymetrix Proprietary Database