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[177452_at]

Description C05G5.5 /REP_DB=WormBase Gene ID /WP=CE20483 /TR=Q17678 /GB=CAA94108.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 08      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 26.1
(-3)
A 		38.4
(-1.6)
A 		58.3
(0.5)
A 		80.7
(3)
A 		55
B 19.7
(-3)
A 		22.1
(-2.7)
A 		39.2
(-0.7)
A 		70.6
(3)
A 		51
C 39.3
(-1.3)
A 		27.7
(-2.6)
A 		23.7
(-3)
A 		78.8
(3)
A 		55
avr 28.4
(-3) 		29.4
(-2.9) 		40.4
(-1.5) 		76.7
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 9.4
(-3)
A 		53
(3)
A 		10
(-2.9)
A 		9.3
(-3)
A 		44.6
(1.8)
M 		16.8
(-2)
A 		44
B 17
(-1.2)
A 		46.8
(3)
A 		45
(2.7)
A 		4.3
(-3)
A 		35.5
(1.4)
A 		23.5
(-0.3)
A 		43
C 29.2
(-0.3)
M 		35.8
(0.5)
A 		7.3
(-3)
A 		56.1
(3)
A 		27.1
(-0.6)
A 		33.7
(0.2)
P 		49
avr 18.5
(-3) 		45.2
(3) 		20.8
(-2.5) 		23.2
(-1.9) 		35.7
(0.9) 		24.7
(-1.6) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 9.5
(-2)
A 		8.3
(-3)
A 		15.2
(3)
A 		11.8
(0)
A 		7
B 6.3
(-2.5)
A 		5.5
(-3)
A 		9.1
(-0.7)
A 		15
(3)
A 		10
C 13
(2.7)
A 		8
(-3)
A 		8.3
(-2.7)
A 		13.3
(3)
A 		5
avr 9.6
(-0.7) 		7.3
(-3) 		10.9
(0.5) 		13.4
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 1.7
(-3)
A 		18.9
(3)
A 		2.2
(-2.8)
A 		2.4
(-2.8)
A 		13.5
(1.1)
M 		4.1
(-2.2)
A 		17
B 5.9
(-1)
A 		15.6
(3)
A 		10.9
(1.1)
A 		1.1
(-3)
A 		14.4
(2.5)
A 		8.8
(0.2)
A 		15
C 10.8
(2.7)
M 		10.9
(2.7)
A 		1.9
(-3)
A 		11.3
(3)
A 		8.8
(1.4)
A 		11.3
(3)
P 		9
avr 6.1
(-2.3) 		15.1
(3) 		5
(-2.9) 		4.9
(-3) 		12.2
(1.3) 		8.1
(-1.1) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177452_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17932
Sequence Type Exemplar sequence
Representative Public ID C05G5.5 NCBI
Target Description C05G5.5 /REP_DB=WormBase Gene ID /WP=CE20483 /TR=Q17678 /GB=CAA94108.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078050(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078050 NCBI Caenorhabditis elegans C05G5.5 (C05G5.5) mRNA, complete cds. 11/11 None
GENEFINDER00000001561 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14755993:14761105:-1 11/11 None
C05G5.5 ENSEMBL cdna:known chromosome:CEL140:X:14755993:14760750:-1 gene:C05G5.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001551 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14757080-14760881(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05G5.5
Entrez Gene 181571 Entrez gene
SwissProt Q17678 EMBL-EBI
WormBase CE36627 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.12623.1.S1_AT similar to C05G5.5 cfa
CHICKEN:GGA.17847.1.S1_AT similar to LOC129293 protein gga
CHICKEN:GGA.2644.1.S1_AT similar to LOC129293 protein gga
HU35KSUBA:RC_AA253471_AT hypothetical protein LOC129293 hs
U133_X3P:HS.36723.0.A1_3P_AT hypothetical protein LOC129293 hs
HG-U133_PLUS_2:227867_AT hypothetical protein LOC129293 hs
HG-U133B:227867_AT hypothetical protein LOC129293 hs
HG-U95B:51270_AT hypothetical protein LOC129293 hs
MOUSE430_2:1443939_AT similar to protein of bilaterial origin like (XP376) mm
MOE430B:1443939_AT similar to protein of bilaterial origin like (XP376) mm
MG-U74CV2:134338_AT similar to protein of bilaterial origin like (XP376) mm
MOE430B:1459183_AT PREDICTED: similar to protein of bilaterial origin like (XP376) [Mus musculus], mRNA sequence mm
MOUSE430_2:1459183_AT PREDICTED: similar to protein of bilaterial origin like (XP376) [Mus musculus], mRNA sequence mm
Protein Similarities
Method ID Description E-Value
blast CAA94108 Hypothetical protein C05G5.5 [Caenorhabditis elegans] ref|NP_510451.3| C05G5.5 [Caenorhabditis elegans] 0.0
blast CAE63226 Hypothetical protein CBG07586 [Caenorhabditis briggsae] 2.0E-93
blast CAE63227 Hypothetical protein CBG07587 [Caenorhabditis briggsae] 3.0E-56
blast CAE63227 Hypothetical protein CBG07587 [Caenorhabditis briggsae] 4.0E-55
Sequence
Target Sequence 
>C. ELEGANS:177452_AT
tggagaaaacgcccaatttggttattatttctgctctatcaaatgtgcgaaaatgtgttt
gaaaaaagttcaagtccattactagatttgtacattgcacaaagagccaccgacgagaag
aagacaattatcccgattgaaaccgccgaggagcaatgcaatccagttgtttcagtttct
accaatgaaattatctttgcaatagagcatactgtgcactattttgaagataaaatcttg
gacaatccatcaaaggataatgagtctagaagcagtttgaaagagctcgtcgaacattat
aagtgtgggactctgaaggaagatatgtttgataaagatggaatgtctataattgactat
gcaactggaacaacagaacggtttaaagctgacgagatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGAAAACGCCCAATTTGGTTAT 431 517 619 Antisense
ATTTGGTTATTATTTCTGCTCTATC 222 19 634 Antisense
ATTTCTGCTCTATCAAATGTGCGAA 586 15 645 Antisense
GTTCAAGTCCATTACTAGATTTGTA 582 445 686 Antisense
ACATTGCACAAAGAGCCACCGACGA 129 105 710 Antisense
ATTATCCCGATTGAAACCGCCGAGG 221 3 745 Antisense
ACCGCCGAGGAGCAATGCAATCCAG 673 89 760 Antisense
AATCCAGTTGTTTCAGTTTCTACCA 649 167 778 Antisense
TAGAGCATACTGTGCACTATTTTGA 690 651 821 Antisense
AGAGCTCGTCGAACATTATAAGTGT 372 69 900 Antisense
GAACGGTTTAAAGCTGACGAGATCA 104 345 994 Antisense
Sequence Source Affymetrix Proprietary Database