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[177450_at]

Description F21D9.8 /REP_DB=WormBase Gene ID /WP=CE18633 /TR=Q9XV69 /GB=CAB04165.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.6
(-3)
A 		4
(-2.2)
A 		5.2
(-1.6)
A 		13.5
(3)
A 		11
B 8.8
(1)
A 		11.3
(3)
A 		5.5
(-1.6)
A 		3.8
(-3)
A 		8
C 5.3
(0.4)
A 		6.6
(3)
A 		4.3
(-1.6)
A 		3.6
(-3)
A 		3
avr 5.6
(-1.4) 		7.3
(3) 		5
(-3) 		7
(2.2) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 4.6
(-2.4)
A 		3.7
(-2.8)
A 		3.4
(-3)
A 		9.9
(-0.1)
A 		3.3
(-3)
A 		17
(3)
A 		14
B 5.1
(-0.3)
A 		2.6
(-2.6)
A 		5.8
(0.4)
A 		8.6
(3)
A 		7.5
(2)
A 		2.2
(-3)
A 		6
C 4.9
(-0.9)
A 		2
(-3)
A 		3.5
(-1.9)
A 		10.3
(3)
A 		6.4
(0.2)
A 		5.9
(-0.2)
A 		8
avr 4.9
(-1.1) 		2.8
(-3) 		4.2
(-1.8) 		9.6
(3) 		5.7
(-0.4) 		8.4
(1.9) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.9
(-3)
A 		0.9
(-3)
A 		1.4
(-0.3)
A 		2
(3)
A 		1
B 2.8
(3)
A 		2.8
(3)
A 		1.3
(-1.5)
A 		0.8
(-3)
A 		2
C 1.7
(2.1)
A 		1.9
(3)
A 		1.5
(1.2)
A 		0.6
(-3)
A 		1
avr 1.8
(2.3) 		1.9
(3) 		1.4
(-0.8) 		1.1
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.8
(-2.8)
A 		1.3
(-2)
A 		0.7
(-3)
A 		2.5
(0.1)
A 		1
(-2.5)
A 		4.2
(3)
A 		4
B 1.8
(-0.3)
A 		0.9
(-2.7)
A 		1.4
(-1.4)
A 		2.3
(1.1)
A 		3
(3)
A 		0.8
(-3)
A 		2
C 1.8
(1.8)
A 		0.6
(-3)
A 		0.9
(-1.8)
A 		2.1
(3)
A 		2.1
(3)
A 		2
(2.6)
A 		2
avr 1.5
(-0.4) 		0.9
(-3) 		1
(-2.6) 		2.3
(3) 		2
(1.7) 		2.3
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177450_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14516
Sequence Type Exemplar sequence
Representative Public ID F21D9.8 NCBI
Target Description F21D9.8 /REP_DB=WormBase Gene ID /WP=CE18633 /TR=Q9XV69 /GB=CAB04165.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075348(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075348 NCBI Caenorhabditis elegans F21D9.8 (F21D9.8) mRNA, complete cds. 11/11 None
F21D9.8 ENSEMBL cdna:known chromosome:CEL140:V:19281904:19282561:-1 gene:F21D9.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl F21D9.8
Entrez Gene 184777 Entrez gene
SwissProt Q9XV69 EMBL-EBI
WormBase CE18633 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04165 Hypothetical protein F21D9.8 [Caenorhabditis elegans] ref|NP_507749.1| F21D9.8 [Caenorhabditis elegans] 1.0E-100
blast AAK85487 Hypothetical protein F41G4.7 [Caenorhabditis elegans] ref|NP_510719.2| F41G4.7 [Caenorhabditis elegans] 2.0E-14
blast CAB07711 Hypothetical protein ZC15.3 [Caenorhabditis elegans] ref|NP_507915.1| ZC15.3 [Caenorhabditis elegans] 2.0E-14
Sequence
Target Sequence 
>C. ELEGANS:177450_AT
tcggagggctcaagactgacgtcacaaaaattctggacaatgtctacaacgccgtcaccg
gcttgacaaaccaatgggccgacgtccagcagtccatgactatcaacaacaccactgaga
gccaagaaacatcccaccaggctgcccaggcaggcgctcaatcgagcagtaacatctgtc
agctatgtgccgctaaccacgacatcagcaactgtaccagctacaataactggatcactc
gacgcgaacgagcagaagcgctatcgatgtgcaagcactgtctcaccgtcggtgtcactg
atgacgactggcatcacgaaggctgcccaaaagccaaggacacttgctccgtgtgcgcca
acaacaccaatcgtgttggctgcaaataccaccatgaagctctctgcacttcagtcaaga
cc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGGAGGGCTCAAGACTGACGTCAC 634 605 110 Antisense
TGGACAATGTCTACAACGCCGTCAC 532 547 143 Antisense
GACGTCCAGCAGTCCATGACTATCA 544 377 190 Antisense
TAACATCTGTCAGCTATGTGCCGCT 647 639 279 Antisense
GACATCAGCAACTGTACCAGCTACA 394 369 310 Antisense
CGATGTGCAAGCACTGTCTCACCGT 273 249 374 Antisense
TCTCACCGTCGGTGTCACTGATGAC 301 611 390 Antisense
TGACGACTGGCATCACGAAGGCTGC 324 569 411 Antisense
AAAGCCAAGGACACTTGCTCCGTGT 398 123 439 Antisense
CAAATACCACCATGAAGCTCTCTGC 170 193 492 Antisense
AGCTCTCTGCACTTCAGTCAAGACC 33 81 507 Antisense
Sequence Source Affymetrix Proprietary Database