[Home] | [Total List]

[177449_at]

Description F43G6.2 /REP_DB=WormBase Gene ID /WP=CE02220 /TR=Q20372 /GB=CAA90400.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 34      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 46.8
(-1.5)
A 		82.3
(3)
A 		44.1
(-1.9)
A 		35.4
(-3)
A 		47
B 48.6
(-2.2)
A 		91.5
(3)
A 		67.1
(0)
A 		41.9
(-3)
A 		50
C 22.6
(-3)
A 		73
(0.7)
A 		33.1
(-2.2)
A 		104.2
(3)
A 		82
avr 39.3
(-3) 		82.3
(3) 		48.1
(-1.8) 		60.5
(-0) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 39
(-1.1)
A 		22.4
(-3)
A 		71.9
(2.7)
M 		74.1
(3)
A 		27.2
(-2.4)
A 		63.9
(1.8)
A 		52
B 6.3
(-3)
A 		47.8
(-0.6)
A 		112.2
(3)
A 		59.4
(0)
A 		56.9
(-0.1)
A 		10.9
(-2.7)
A 		106
C 16.2
(-3)
A 		54.2
(-0.3)
A 		68.1
(0.7)
A 		99.3
(3)
A 		40.2
(-1.3)
A 		21.2
(-2.6)
A 		83
avr 20.5
(-3) 		41.5
(-1) 		84.1
(3) 		77.6
(2.4) 		41.4
(-1) 		32
(-1.9) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 17
(2.6)
A 		17.9
(3)
A 		11.5
(-0)
A 		5.2
(-3)
A 		13
B 15.5
(-0.1)
A 		22.6
(3)
A 		15.5
(-0.1)
A 		8.9
(-3)
A 		14
C 7.5
(-3)
A 		21
(3)
A 		11.5
(-1.2)
A 		17.6
(1.5)
A 		14
avr 13.3
(-1.4) 		20.5
(3) 		12.8
(-1.7) 		10.6
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 7.2
(-3)
A 		8
(-2.6)
A 		15.7
(1.4)
M 		18.8
(3)
A 		8.2
(-2.5)
A 		15.6
(1.3)
A 		12
B 2.2
(-3)
A 		15.9
(0.3)
A 		27.3
(3)
A 		15.7
(0.2)
A 		23.1
(2)
A 		4.1
(-2.5)
A 		25
C 6
(-3)
A 		16.5
(1.5)
A 		17.3
(1.8)
A 		20
(3)
A 		13
(0)
A 		7.1
(-2.5)
A 		14
avr 5.1
(-3) 		13.5
(0.4) 		20.1
(3) 		18.2
(2.2) 		14.8
(0.9) 		8.9
(-1.5) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177449_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3407
Sequence Type Exemplar sequence
Representative Public ID F43G6.2 NCBI
Target Description F43G6.2 /REP_DB=WormBase Gene ID /WP=CE02220 /TR=Q20372 /GB=CAA90400.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064116(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064116 NCBI Caenorhabditis elegans F43G6.2 (F43G6.2) mRNA, complete cds. 11/11 None
F43G6.2 ENSEMBL cdna:known chromosome:CEL140:II:11782401:11782938:1 gene:F43G6.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071909 1/11 Cross Hyb Matching Probes None
T19H12.2.1 1/11 Cross Hyb Matching Probes A B 
T19H12.2.2 1/11 Cross Hyb Matching Probes A B 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11782397-11782935(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F43G6.2
Entrez Gene 185713 Entrez gene
SwissProt Q20372 EMBL-EBI
WormBase CE02220 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90400 Hypothetical protein F43G6.2 [Caenorhabditis elegans] ref|NP_496517.1| F43G6.2 [Caenorhabditis elegans] 1.0E-73
Sequence
Target Sequence 
>C. ELEGANS:177449_AT
agaagcccattcacagtcacagagcggcgaccctatatcactttgctttttgtttgcaca
acctaagacggtcaccgaacagcccatttactgtcagaaaccgagacgaacaaaaggatg
agaagccttatgaaaacaaaggcaaaataaataaattttttctagacctgacttatttcc
aattaccgtacccagttagcgaacgcgctccactgcgattgcgcgcaaaaatcgaaacgc
gcgaaaaaattaattttaaaattcgtgcatcttcttcaccagctgttctcgtgaattttc
catttcctcgacattcattgctggttagcttgtcaccagctcacgaaactaacaatgccg
tcgatggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGCCCATTCACAGTCACAGAGC 346 73 17 Antisense
CGACCCTATATCACTTTGCTTTTTG 190 251 44 Antisense
GCACAACCTAAGACGGTCACCGAAC 372 317 72 Antisense
GTCACCGAACAGCCCATTTACTGTC 541 465 87 Antisense
TTTTTCTAGACCTGACTTATTTCCA 235 673 173 Antisense
TCCAATTACCGTACCCAGTTAGCGA 200 585 194 Antisense
GTTCTCGTGAATTTTCCATTTCCTC 211 443 301 Antisense
CATTTCCTCGACATTCATTGCTGGT 472 215 317 Antisense
ATTCATTGCTGGTTAGCTTGTCACC 618 11 329 Antisense
CTTGTCACCAGCTCACGAAACTAAC 155 215 345 Antisense
GAAACTAACAATGCCGTCGATGGAG 273 355 361 Antisense
Sequence Source Affymetrix Proprietary Database