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[177448_at]

Description R155.3 /REP_DB=WormBase Gene ID /WP=CE12866 /TR=O01923 /GB=AAB54273.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 49      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 3.6
(-3)
A 		5.5
(-0)
A 		7.4
(3)
A 		6.8
(2.1)
A 		4
B 4.5
(-0.7)
A 		4.9
(-0.3)
A 		7.8
(3)
A 		2.5
(-3)
A 		5
C 3.1
(-2.6)
A 		8.9
(3)
A 		2.7
(-3)
A 		3.7
(-2)
A 		6
avr 3.7
(-3) 		6.4
(3) 		6
(2.1) 		4.3
(-1.7) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 4.5
(-1.4)
A 		4
(-1.9)
A 		5.5
(-0.2)
A 		3.1
(-3)
A 		8.2
(3)
A 		5.6
(-0.1)
A 		5
B 5
(0)
A 		2.9
(-2)
A 		8
(3)
A 		1.9
(-3)
A 		6.6
(1.6)
A 		6.5
(1.5)
A 		6
C 2.1
(-3)
A 		4.1
(-2.6)
A 		6.3
(-2.1)
A 		3.5
(-2.7)
A 		8
(-1.7)
A 		29.3
(3)
A 		27
avr 3.9
(-2.4) 		3.7
(-2.5) 		6.6
(-0.9) 		2.8
(-3) 		7.6
(-0.4) 		13.8
(3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.3
(-1)
A 		1.2
(-1.7)
A 		1.9
(3)
A 		1
(-3)
A 		1
B 1.4
(1.2)
A 		1.2
(0.2)
A 		1.8
(3)
A 		0.5
(-3)
A 		1
C 1
(-1.8)
A 		2.6
(3)
A 		0.9
(-2.1)
A 		0.6
(-3)
A 		2
avr 1.2
(0) 		1.7
(3) 		1.5
(1.8) 		0.7
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.8
(-3)
A 		1.4
(-0.9)
A 		1.2
(-1.6)
A 		0.8
(-3)
A 		2.5
(3)
A 		1.4
(-0.9)
A 		2
B 1.7
(0.3)
A 		1
(-1.6)
A 		1.9
(0.8)
A 		0.5
(-3)
A 		2.7
(3)
A 		2.4
(2.2)
A 		2
C 0.8
(-2.9)
A 		1.2
(-2.7)
A 		1.6
(-2.4)
A 		0.7
(-3)
A 		2.6
(-1.7)
A 		9.8
(3)
A 		9
avr 1.1
(-2.4) 		1.2
(-2.2) 		1.6
(-1.6) 		0.7
(-3) 		2.6
(0) 		4.5
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177448_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8348
Sequence Type Exemplar sequence
Representative Public ID R155.3 NCBI
Target Description R155.3 /REP_DB=WormBase Gene ID /WP=CE12866 /TR=O01923 /GB=AAB54273.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065084(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065084 NCBI Caenorhabditis elegans R155.3 (R155.3) mRNA, complete cds. 11/11 None
SNAP00000032920 ENSEMBL cdna:SNAP chromosome:CEL140:III:1971220:1975753:-1 11/11 None
GENEFINDER00000032926 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1971220:1975502:-1 11/11 None
R155.3 ENSEMBL cdna:known chromosome:CEL140:III:1971220:1975502:-1 gene:R155.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1971219-1975502(-) 99.54 100.0
Public Domain and Genome References
Gene Title
Ensembl R155.3
Entrez Gene 187909 Entrez gene
SwissProt O01923 EMBL-EBI
WormBase CE12866 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4721 phosphoprotein phosphatase activity inferred from electronic annotation QuickGO AmiGO
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB54273 Hypothetical protein R155.3 [Caenorhabditis elegans] ref|NP_497485.1| R155.3 [Caenorhabditis elegans] 0.0
blast AAK21449 Hypothetical protein R06B10.2 [Caenorhabditis elegans] ref|NP_497309.1| R06B10.2 [Caenorhabditis elegans] 1.0E-100
blast AAK29873 Hypothetical protein Y22D7AR.2 [Caenorhabditis elegans] ref|NP_497449.1| Y22D7AR.2 [Caenorhabditis elegans] 1.0E-90
blast AAK21449 Hypothetical protein R06B10.2 [Caenorhabditis elegans] ref|NP_497309.1| R06B10.2 [Caenorhabditis elegans] 1.0E-81
blast AAK29873 Hypothetical protein Y22D7AR.2 [Caenorhabditis elegans] ref|NP_497449.1| Y22D7AR.2 [Caenorhabditis elegans] 8.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 5.4E-63
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.4E-21
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 5.4E-63
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497485.1 1 668-690
R155.3 1 668-690
SNAP00000032920 1 734-756
GENEFINDER00000032926 1 668-690
Sequence
Target Sequence 
>C. ELEGANS:177448_AT
caacctgacactctattgttcacctcgttgattcaaaagatcaagaactctacgacgcct
gttatggttcattgcattgatggaatctctagatctgcggcctttgcatcgatgataatt
ggctaccagctagttatccaatctcttggctctgtaaaacttgaagctgtggtatcctac
attcgctcgcaacgtgctatggcgatcacttcggctctggaactcgcttttgttgatgct
ggaattgtgaaattgcttggattgtttgtcgatgctcaacagaataagggagaactgaca
agagaacagtgtattctggcacaacaagagctcatgagattctacacaagttgcccggaa
gctcaaaaatggttttcttggccgcaaaaacaacaggcaaaaactggagagaagagaaca
tacaagaagatcaaacaactcaaagattatggatttgaagttgcacctgagccaaagcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACCTGACACTCTATTGTTCACCT 91 187 2896 Antisense
GAACTCTACGACGCCTGTTATGGTT 586 347 2940 Antisense
ATCTGCGGCCTTTGCATCGATGATA 33 35 2988 Antisense
CTACCAGCTAGTTATCCAATCTCTT 219 225 3018 Antisense
CCAATCTCTTGGCTCTGTAAAACTT 105 277 3033 Antisense
GAAGCTGTGGTATCCTACATTCGCT 540 343 3058 Antisense
CTACATTCGCTCGCAACGTGCTATG 299 227 3072 Antisense
AACGTGCTATGGCGATCACTTCGGC 655 143 3086 Antisense
GCTCTGGAACTCGCTTTTGTTGATG 173 299 3109 Antisense
GATTCTACACAAGTTGCCCGGAAGC 179 431 3233 Antisense
TGAAGTTGCACCTGAGCCAAAGCCA 488 575 3351 Antisense
Sequence Source Affymetrix Proprietary Database