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[177447_s_at]

Description F32H2.7 /REP_DB=WormBase Gene ID /WP=CE09882 /TR=O17859 /GB=CAB04247.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 24      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 51.5
(-0)
A 		18.6
(-3)
A 		85.3
(3)
A 		72.7
(1.9)
A 		67
B 46.4
(-3)
A 		78.1
(3)
A 		62.8
(0.1)
A 		54.4
(-1.5)
A 		32
C 31.1
(-3)
A 		75.7
(1.1)
A 		48.8
(-1.4)
A 		96.2
(3)
A 		65
avr 43
(-3) 		57.5
(-0.2) 		65.6
(1.3) 		74.4
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 495
1 2 3 4 5 6 range
A 74.7
(-2.6)
A 		74.7
(-2.6)
A 		44.4
(-3)
A 		138.4
(-1.8)
A 		254.4
(-0.3)
P 		514.7
(3)
P 		470
B 82.5
(-2.7)
A 		64.1
(-3)
A 		77
(-2.8)
A 		106.8
(-2.3)
A 		285.2
(0.8)
P 		417.1
(3)
P 		353
C 53.8
(-2.5)
A 		20.2
(-3)
A 		44.8
(-2.7)
A 		101.2
(-1.9)
A 		326.9
(1.3)
P 		445.1
(3)
P 		425
avr 70.3
(-2.7) 		53
(-3) 		55.4
(-3) 		115.5
(-2.1) 		288.8
(0.5) 		459
(3) 		406
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 18.7
(1.8)
A 		4
(-3)
A 		22.3
(3)
A 		10.6
(-0.8)
A 		18
B 14.8
(-0.5)
A 		19.3
(3)
A 		14.6
(-0.7)
A 		11.6
(-3)
A 		8
C 10.3
(-3)
A 		21.8
(3)
A 		17
(0.5)
A 		16.2
(0.1)
A 		12
avr 14.6
(-0.9) 		15
(-0.5) 		18
(3) 		12.8
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 13.8
(-2.8)
A 		26.6
(-2.1)
A 		9.7
(-3)
A 		35.1
(-1.7)
A 		76.8
(0.5)
P 		125.3
(3)
P 		116
B 28.7
(-2.6)
A 		21.3
(-2.9)
A 		18.7
(-3)
A 		28.3
(-2.6)
A 		115.9
(1.3)
P 		155.5
(3)
P 		137
C 19.9
(-2.4)
A 		6.2
(-3)
A 		11.4
(-2.8)
A 		20.4
(-2.4)
A 		105.8
(1.2)
P 		149
(3)
P 		143
avr 20.8
(-2.7) 		18
(-2.8) 		13.3
(-3) 		27.9
(-2.3) 		99.5
(1) 		143.3
(3) 		130
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177447_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.862
Sequence Type Exemplar sequence
Representative Public ID F32H2.7 NCBI
Target Description F32H2.7 /REP_DB=WormBase Gene ID /WP=CE09882 /TR=O17859 /GB=CAB04247.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060019(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060019 NCBI Caenorhabditis elegans F32H2.7 (F32H2.7) mRNA, complete cds. 11/11 None
GENEFINDER00000013776 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9003749:9005309:-1 11/11 None
SNAP00000013735 ENSEMBL cdna:SNAP chromosome:CEL140:I:9003899:9007688:-1 11/11 None
F32H2.7 ENSEMBL cdna:known chromosome:CEL140:I:9003819:9005309:-1 gene:F32H2.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9003749-9005240(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F32H2.7
Entrez Gene 172716 Entrez gene
SwissProt O17859 EMBL-EBI
WormBase CE09882 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04247 Hypothetical protein F32H2.7 [Caenorhabditis elegans] ref|NP_492420.1| F32H2.7 [Caenorhabditis elegans] 0.0
blast CAE67012 Hypothetical protein CBG12413 [Caenorhabditis briggsae] 4.0E-84
blast CAE67012 Hypothetical protein CBG12413 [Caenorhabditis briggsae] 3.0E-80
blast CAB04239 Hypothetical protein F32H2.6 [Caenorhabditis elegans] ref|NP_492421.1| F32H2.6 [Caenorhabditis elegans] 1.0E-75
blast CAE67012 Hypothetical protein CBG12413 [Caenorhabditis briggsae] 6.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR000794 EMBL-EBI Beta-ketoacyl synthase 1.1E-11
Sequence
Target Sequence 
>C. ELEGANS:177447_S_AT
aatctatttccgagctcaatcttgctaccggacgctccaccgacactctccgtaccgccc
aaagcgtcgagccgaatcttttgagcattcgcactgccaactcacttgagccaaaccttt
tgagcgtttactcggcccgtagtcctggagtttttactaagaaggaaggaatgctgactg
ctcaatctcctgagccaaatcttctgagtgttcgcacagccaactcgttggagccgaatc
ttttgagcgtgaaaccggcaaaggaattgacaacaatcagtaacttgaaagctcagtctc
caggactgctgactgctcaaagcgctgaaccaaaccttctgtcaacccgtaccgcccgtt
cctcatctaacacttctcttattgacactgaatcgaaggatgttcagacttgcattgaga
tccaatccccaacaactggagtattgacggctcaaagtattgcaactccatccggaagtt
gtcaatctgtgtttactgctaaggaaattgaatcgattcgttcgtcgcaggatgttctca
ctgctgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCTATTTCCGAGCTCAATCTTGC 639 169 587 Antisense
GCGTCGAGCCGAATCTTTTGAGCAT 685 291 650 Antisense
TTTTGAGCATTCGCACTGCCAACTC 3 679 665 Antisense
AGGAATGCTGACTGCTCAATCTCCT 123 55 753 Antisense
CAATCTCCTGAGCCAAATCTTCTGA 480 181 769 Antisense
TCTTCTGAGTGTTCGCACAGCCAAC 599 617 786 Antisense
GCCAACTCGTTGGAGCCGAATCTTT 610 277 805 Antisense
CAGGACTGCTGACTGCTCAAAGCGC 183 209 887 Antisense
CAAAGCGCTGAACCAAACCTTCTGT 219 191 904 Antisense
GAATCGATTCGTTCGTCGCAGGATG 299 329 1096 Antisense
GTCGCAGGATGTTCTCACTGCTGTC 392 475 1110 Antisense
Sequence Source Affymetrix Proprietary Database