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[177446_at]

Description T19C4.3 /REP_DB=WormBase Gene ID /WP=CE06467 /TR=Q22568 /GB=CAA99915.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 11      6grp_cgc > 84      6grp_cgc_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 144
1 2 3 4 range
A 42.4
(-2.1)
P 		30.6
(-3)
A 		42.1
(-2.1)
A 		109.2
(3)
P 		79
B 53.5
(1.4)
P 		51.2
(1.1)
P 		19.9
(-3)
A 		66
(3)
P 		46
C 25.9
(-2.7)
P 		39
(-2.2)
P 		19.2
(-3)
A 		163.5
(3)
P 		144
avr 40.6
(-2.1) 		40.3
(-2.1) 		27.1
(-3) 		112.9
(3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 35.7
(-2.3)
A 		33.3
(-3)
A 		53.1
(3)
P 		47.2
(1.2)
A 		52.3
(2.8)
P 		34.3
(-2.7)
A 		20
B 35.5
(-1.3)
P 		54.6
(3)
P 		36.4
(-1.1)
A 		50.5
(2.1)
A 		44.5
(0.7)
P 		27.9
(-3)
A 		27
C 27.6
(-3)
P 		61.1
(0.8)
P 		37.7
(-1.9)
A 		81.1
(3)
M 		31.7
(-2.5)
P 		31.2
(-2.6)
P 		54
avr 32.9
(-2.6) 		49.7
(0.9) 		42.4
(-0.6) 		59.6
(3) 		42.8
(-0.5) 		31.1
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 15.4
(2.6)
P 		6.6
(-3)
A 		11
(-0.2)
A 		16
(3)
P 		9
B 17.1
(3)
P 		12.6
(0.8)
P 		4.6
(-3)
A 		14.1
(1.6)
P 		13
C 8.6
(-2.5)
P 		11.2
(-1.7)
P 		6.7
(-3)
A 		27.6
(3)
P 		21
avr 13.7
(0.2) 		10.1
(-1.6) 		7.4
(-3) 		19.2
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 6.6
(-3)
A 		11.9
(0.5)
A 		11.6
(0.3)
P 		12
(0.5)
A 		15.8
(3)
P 		8.4
(-1.8)
A 		9
B 12.4
(-0.7)
P 		18.2
(3)
P 		8.8
(-3)
A 		13.4
(-0.1)
A 		18.1
(2.9)
P 		10.4
(-2)
A 		9
C 10.2
(-2.6)
P 		18.6
(3)
P 		9.6
(-3)
A 		16.3
(1.5)
M 		10.2
(-2.6)
P 		10.4
(-2.5)
P 		9
avr 9.7
(-3) 		16.2
(3) 		10
(-2.7) 		13.9
(0.9) 		14.7
(1.6) 		9.7
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177446_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13656
Sequence Type Exemplar sequence
Representative Public ID T19C4.3 NCBI
Target Description T19C4.3 /REP_DB=WormBase Gene ID /WP=CE06467 /TR=Q22568 /GB=CAA99915.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073436(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073436 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-41) (srg-41) mRNA, complete cds. 11/11 None
GENEFINDER00000015944 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11161308:11164479:-1 11/11 None
T19C4.3 ENSEMBL cdna:known chromosome:CEL140:V:11163040:11164479:-1 gene:T19C4.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015937 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11163039-11164479(-) 99.67 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srg-41
Ensembl T19C4.3
Entrez Gene 188592 Entrez gene
SwissProt Q22568 EMBL-EBI
WormBase CE06467 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99915 Hypothetical protein T19C4.3 [Caenorhabditis elegans] ref|NP_505837.1| Serpentine Receptor, class G (gamma) family member (srg-41) [Caenorhabditis elegans] 1.0E-154
blast CAA99915 Hypothetical protein T19C4.3 [Caenorhabditis elegans] ref|NP_505837.1| Serpentine Receptor, class G (gamma) family member (srg-41) [Caenorhabditis elegans] 1.0E-153
blast CAE75182 Hypothetical protein CBG23123 [Caenorhabditis briggsae] 6.0E-81
blast CAE75182 Hypothetical protein CBG23123 [Caenorhabditis briggsae] 8.0E-81
blast CAE71088 Hypothetical protein CBG17938 [Caenorhabditis briggsae] 9.0E-72
blast CAE71088 Hypothetical protein CBG17938 [Caenorhabditis briggsae] 1.0E-71
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505837.1 7 5-27,40-62,89-111,124-143,176-195,216-238,248-270
T19C4.3 7 5-27,40-62,89-111,124-143,176-195,216-238,248-270
GENEFINDER00000015944 8 5-27,40-62,89-111,124-143,176-195,216-238,248-270,299-321
Sequence
Target Sequence 
>C. ELEGANS:177446_AT
tagcacaactgctctaatctctgtcaatagattaagtgttctttggaattataaaacatt
tgaaccgatttggagaaaattcacttggttcattatgtttgtggtttttgcctttccatt
tgctgatacacatcggtgttttaaatattcaacaaaagttacctacgattcagaatctga
cagttattcctttgcaactgaaatgccaattcctgacacttttatatatttgattccatt
tatggtagttgtaagtgtctcctcagtacttgttaatgttacaagtttcgtctcattgcg
tcatttgaaaacacaaaaacgtggaaaagttgagaagaattttatttcaataatggcaat
aacatgtgctgttcaactacttggatgtgttctcagtgttgcaagagtttatttctcagc
taacagaatagctgcaacacttgcttcatttcttccatttgttagtgatgggctcactct
tgtacaaccatggcttcttgtggttttcagtagtacgatgagaagaagaataaagcaagt
tctcggatatcagcaagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGCACAACTGCTCTAATCTCTGTC 686 651 318 Antisense
TGTTTGTGGTTTTTGCCTTTCCATT 214 561 413 Antisense
AATCTGACAGTTATTCCTTTGCAAC 610 169 491 Antisense
GAAATGCCAATTCCTGACACTTTTA 366 361 517 Antisense
GGTAGTTGTAAGTGTCTCCTCAGTA 672 503 561 Antisense
GTGTCTCCTCAGTACTTGTTAATGT 226 487 572 Antisense
AAGTTTCGTCTCATTGCGTCATTTG 309 157 600 Antisense
AACATGTGCTGTTCAACTACTTGGA 494 137 678 Antisense
GATGGGCTCACTCTTGTACAACCAT 593 407 784 Antisense
CATGGCTTCTTGTGGTTTTCAGTAG 315 209 806 Antisense
GCAAGTTCTCGGATATCAGCAAGGA 366 321 852 Antisense
Sequence Source Affymetrix Proprietary Database