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[177445_at] G-protein coupled receptor, srg family

Description ZK678.6 /REP_DB=WormBase Gene ID /WP=CE18457 /TR=O62517 /GB=CAB01907.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 37      4grp_total > 19      6grp_cgc > 26      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 62.6
(0.3)
P 		60.6
(0.1)
A 		32.2
(-3)
A 		87.3
(3)
P 		55
B 28.5
(-3)
A 		74.8
(3)
A 		42
(-1.3)
A 		44.3
(-1)
P 		46
C 32.1
(-2.5)
A 		49.2
(-1.4)
A 		24.4
(-3)
A 		119.5
(3)
P 		95
avr 41.1
(-2) 		61.5
(0.4) 		32.9
(-3) 		83.7
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 32.3
(3)
A 		2.3
(-3)
A 		5.4
(-2.4)
A 		11.7
(-1.1)
A 		17.8
(0.1)
A 		24.5
(1.4)
A 		30
B 43.1
(3)
A 		10.4
(-2.3)
A 		18.5
(-1)
A 		6.2
(-3)
A 		7.7
(-2.8)
A 		9.6
(-2.4)
A 		37
C 5.5
(-2.7)
A 		49.7
(2.5)
M 		5.1
(-2.7)
A 		53.6
(3)
A 		2.7
(-3)
A 		38.4
(1.2)
P 		51
avr 27
(3) 		20.8
(0.9) 		9.7
(-2.9) 		23.8
(1.9) 		9.4
(-3) 		24.2
(2) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 22.8
(3)
P 		13.2
(-1)
A 		8.4
(-3)
A 		12.8
(-1.2)
P 		14
B 9.1
(-3)
A 		18.5
(3)
A 		9.7
(-2.6)
A 		9.4
(-2.8)
P 		9
C 10.6
(-1.9)
A 		14.1
(-0.1)
A 		8.5
(-3)
A 		20.1
(3)
P 		12
avr 14.2
(2) 		15.3
(3) 		8.9
(-3) 		14.1
(1.9) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 6
(3)
A 		0.8
(-3)
A 		1.2
(-2.5)
A 		3
(-0.5)
A 		5.4
(2.3)
A 		6
(3)
A 		5
B 15
(3)
A 		3.5
(-2.1)
A 		4.5
(-1.7)
A 		1.6
(-3)
A 		3.1
(-2.3)
A 		3.6
(-2.1)
A 		13
C 2
(-2.5)
A 		15.2
(3)
M 		1.3
(-2.8)
A 		10.8
(1.2)
A 		0.9
(-3)
A 		12.9
(2)
P 		14
avr 7.7
(3) 		6.5
(1.7) 		2.3
(-3) 		5.1
(0.1) 		3.1
(-2.1) 		7.5
(2.8) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177445_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17640
Sequence Type Exemplar sequence
Representative Public ID ZK678.6 NCBI
Target Description ZK678.6 /REP_DB=WormBase Gene ID /WP=CE18457 /TR=O62517 /GB=CAB01907.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078188(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078188 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-64) (srg-64) mRNA, complete cds. 11/11 None
GENEFINDER00000038628 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15736762:15740544:-1 11/11 None
ZK678.6 ENSEMBL cdna:known chromosome:CEL140:X:15736762:15740544:-1 gene:ZK678.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038614 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15739404-15740544(-) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srg family
Gene Symbol srg-64
Ensembl ZK678.6
Entrez Gene 191395 Entrez gene
SwissProt O62517 EMBL-EBI
WormBase CE33263 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01907 Hypothetical protein ZK678.6 [Caenorhabditis elegans] ref|NP_510589.2| Serpentine Receptor, class G (gamma) family member (srg-64) [Caenorhabditis elegans] 0.0
blast AAC19246 Serpentine receptor, class g (gamma) protein 62 [Caenorhabditis elegans] ref|NP_503745.2| Serpentine Receptor, class G (gamma) family member (srg-62) [Caenorhabditis elegans] 1.0E-115
blast CAE66764 Hypothetical protein CBG12118 [Caenorhabditis briggsae] 1.0E-105
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510589.2 7 24-46,53-75,108-130,137-156,161-183,190-212,272-291
ZK678.6 7 24-46,53-75,108-130,137-156,161-183,190-212,272-291
GENEFINDER00000038628 7 24-46,53-75,108-130,137-156,161-183,190-212,272-291
Sequence
Target Sequence 
>C. ELEGANS:177445_AT
ggaattccgtccttttttatgatgatcttcactttgtttcttattgcgttcgggaaagtg
tacaaaagtagcttttacactcttgtcatatttgatttgtctacaaatatctgcgtttac
cttaacacatggatcgcgatccggatagaaatgcatccaaacttggtattcttactcaaa
gctgtggaatatacgattcccggctctttgacttggttcaagtacttcccttattggttt
ttccacatgcacttttggacatctgctttattaactgttcatagactttcatcaatattt
ttgttccatcgttatgaatcattctggtcgcgttggtactttattttgctaatatttgca
atagcttgtatctgcagccacttaccaaaatatctatggacagggtttctatacgaagtt
tatattattgatgacgtttttatttgtattcattttcccttggcactcaaagcggcatat
aatgttgttgctgtattctcggtaatatacttcctgcttaatctgtcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATTCCGTCCTTTTTTATGATGA 251 533 97 Antisense
GATGATCTTCACTTTGTTTCTTATT 613 409 117 Antisense
GTAGCTTTTACACTCTTGTCATATT 620 457 164 Antisense
GGAATATACGATTCCCGGCTCTTTG 428 531 282 Antisense
GACTTGGTTCAAGTACTTCCCTTAT 551 369 306 Antisense
AATCATTCTGGTCGCGTTGGTACTT 297 169 413 Antisense
TTGTATCTGCAGCCACTTACCAAAA 337 707 462 Antisense
TATTTGTATTCATTTTCCCTTGGCA 365 661 537 Antisense
TTCCCTTGGCACTCAAAGCGGCATA 309 697 551 Antisense
ATGTTGTTGCTGTATTCTCGGTAAT 495 47 578 Antisense
TATACTTCCTGCTTAATCTGTCAAT 91 661 602 Antisense
Sequence Source Affymetrix Proprietary Database