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[177444_at]

Description T01B7.6 /REP_DB=WormBase Gene ID /WP=CE03590 /TR=Q22047 /GB=CAA91299.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      4grp_highest_8_8 > 28      4grp_high_8_8 > 0      6grp_highest_nonorm > 85      6grp_total > 49      4grp_total > 07      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 632.6
(0.4)
P 		555.9
(-3)
P 		651.2
(1.2)
P 		691.7
(3)
P 		136
B 665.1
(0.3)
P 		549.1
(-3)
P 		628.1
(-0.7)
P 		758.4
(3)
P 		209
C 711.8
(2.6)
P 		718.6
(3)
P 		716.3
(2.9)
P 		602.2
(-3)
P 		116
avr 669.8
(1.9) 		607.9
(-3) 		665.2
(1.5) 		684.1
(3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 535
1 2 3 4 5 6 range
A 884.5
(1.7)
P 		881
(1.7)
P 		464.2
(-3)
P 		711.5
(-0.2)
P 		869.6
(1.6)
P 		998.7
(3)
P 		535
B 753
(0.8)
P 		721.4
(0.3)
P 		515
(-3)
P 		640.7
(-1)
P 		696.4
(-0.1)
P 		892.5
(3)
P 		378
C 940.6
(3)
P 		696.2
(-2.2)
P 		700.3
(-2.1)
P 		658.2
(-3)
P 		857.7
(1.2)
P 		857.5
(1.2)
P 		282
avr 859.4
(2) 		766.2
(0.5) 		559.8
(-3) 		670.1
(-1.1) 		807.9
(1.2) 		916.2
(3) 		356
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 230.3
(3)
P 		120.7
(-2.1)
P 		170.2
(0.2)
P 		101.3
(-3)
P 		129
B 212.1
(3)
P 		135.6
(-3)
P 		145.5
(-2.2)
P 		161.6
(-1)
P 		77
C 235.6
(2.4)
P 		206.6
(1.3)
P 		249.6
(3)
P 		101.5
(-3)
P 		148
avr 226
(3) 		154.3
(-1.1) 		188.4
(0.8) 		121.5
(-3) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 248
1 2 3 4 5 6 range
A 163
(-1.2)
P 		313.3
(3)
P 		101.1
(-3)
P 		180.4
(-0.8)
P 		262.4
(1.6)
P 		243.2
(1)
P 		212
B 262
(1)
P 		240.1
(0.3)
P 		125
(-3)
P 		169.7
(-1.7)
P 		282.9
(1.6)
P 		332.8
(3)
P 		208
C 348.6
(3)
P 		212.4
(-0.8)
P 		178.2
(-1.7)
P 		132.4
(-3)
P 		277.5
(1)
P 		287
(1.3)
P 		216
avr 257.9
(1.8) 		255.3
(1.7) 		134.8
(-3) 		160.8
(-2) 		274.3
(2.5) 		287.7
(3) 		153
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177444_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3549
Sequence Type Exemplar sequence
Representative Public ID T01B7.6 NCBI
Target Description T01B7.6 /REP_DB=WormBase Gene ID /WP=CE03590 /TR=Q22047 /GB=CAA91299.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063456(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063456 NCBI Caenorhabditis elegans T01B7.6 (T01B7.6) mRNA, complete cds. 11/11 None
SNAP00000025607 ENSEMBL cdna:SNAP chromosome:CEL140:II:8722419:8724953:1 11/11 None
GENEFINDER00000025622 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8722126:8724953:1 11/11 None
T01B7.6 ENSEMBL cdna:known chromosome:CEL140:II:8722419:8725450:1 gene:T01B7.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8722122-8724950(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T01B7.6
Entrez Gene 174396 Entrez gene
SwissProt Q22047 EMBL-EBI
WormBase CE35362 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91299 Hypothetical protein T01B7.6 [Caenorhabditis elegans] ref|NP_495857.2| T01B7.6 [Caenorhabditis elegans] 0.0
blast CAE59723 Hypothetical protein CBG03159 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000025622 1 5-24
Sequence
Target Sequence 
>C. ELEGANS:177444_AT
gacacctccgacttggatcagtgtggagtgggactccagttgaggcgaagcaagaagagc
ccttacattatttccagcaacaagacaattttctcggttcatcatttggcccgattagtt
ccactttctctgcagataacttcttcactgaacttactgcttccatatctcaaccttcca
cctcaagtgttgtgaattctggaccaatcagtgatctgcgaaatacacaatcagaagcat
catctccaggattaaagtcggatggaaatgagcccgttgaggagacaaactgctggtcaa
gtcttgaagcagctacaaatggtaacaatccattcaacagctcattctcgtatggatttc
cacatatggaccttccgatctatcagaaaatgatgccaaatgccaacgatattcttaaac
caatgccactcgtcgaagaagaattgaaaccagcaacatcagcaacacactcagaagccg
attcatgcacatgtgggacggagcaactgatttgggatctttggcaaaatccacatttta
tcgctgctttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACACCTCCGACTTGGATCAGTGTG 635 367 1769 Antisense
AAGAGCCCTTACATTATTTCCAGCA 504 153 1823 Antisense
ATTTTCTCGGTTCATCATTTGGCCC 610 13 1856 Antisense
CATTTGGCCCGATTAGTTCCACTTT 597 213 1871 Antisense
GTTCCACTTTCTCTGCAGATAACTT 351 441 1886 Antisense
TGAACTTACTGCTTCCATATCTCAA 697 573 1917 Antisense
CTCAACCTTCCACCTCAAGTGTTGT 375 227 1937 Antisense
TCCATTCAACAGCTCATTCTCGTAT 249 591 2097 Antisense
TTCCACATATGGACCTTCCGATCTA 589 701 2126 Antisense
TTCTTAAACCAATGCCACTCGTCGA 293 687 2180 Antisense
AAATCCACATTTTATCGCTGCTTTC 248 119 2295 Antisense
Sequence Source Affymetrix Proprietary Database