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[177442_at]

Description ZC53.6 /REP_DB=WormBase Gene ID /WP=CE07588 /TR=Q23375 /GB=AAB52619.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 29      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 54.9
(2)
A 		53.4
(1.8)
A 		16.9
(-3)
A 		62.9
(3)
A 		46
B 53.8
(3)
A 		30.4
(-3)
A 		40.3
(-0.5)
A 		33.4
(-2.2)
A 		23
C 51.3
(1.6)
A 		58.7
(2.9)
A 		25.1
(-3)
A 		59.1
(3)
A 		34
avr 53.3
(3) 		47.5
(1.7) 		27.4
(-3) 		51.8
(2.7) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 21.6
(-0.4)
A 		5.3
(-3)
A 		22.1
(-0.3)
A 		42.7
(3)
A 		31.3
(1.2)
A 		7.6
(-2.6)
A 		37
B 2.1
(-3)
A 		19.7
(-0.8)
A 		21.8
(-0.5)
A 		49.5
(3)
A 		2.7
(-2.9)
A 		22.7
(-0.4)
A 		47
C 20.5
(0.1)
A 		32.8
(2.5)
A 		35.6
(3)
A 		4
(-3)
A 		5.3
(-2.8)
A 		17.5
(-0.4)
A 		32
avr 14.7
(-2.5) 		19.3
(-1) 		26.5
(1.2) 		32.1
(3) 		13.1
(-3) 		15.9
(-2.1) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 20
(3)
A 		11.6
(-0.2)
A 		4.4
(-3)
A 		9.2
(-1.2)
A 		16
B 17.1
(3)
A 		7.5
(-2.8)
A 		9.3
(-1.7)
A 		7.1
(-3)
A 		10
C 17
(3)
A 		16.9
(2.9)
A 		8.7
(-3)
A 		10
(-2.1)
A 		8
avr 18
(3) 		12
(-0.4) 		7.5
(-3) 		8.8
(-2.3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 4
(-1.6)
A 		1.9
(-3)
A 		4.8
(-1)
A 		10.8
(3)
A 		9.4
(2.1)
A 		1.9
(-3)
A 		9
B 0.7
(-3)
A 		6.6
(-0.1)
A 		5.3
(-0.8)
A 		13.1
(3)
A 		1.1
(-2.8)
A 		8.5
(0.8)
A 		12
C 7.6
(1.4)
A 		10
(3)
A 		9
(2.3)
A 		0.8
(-3)
A 		1.7
(-2.4)
A 		5.9
(0.3)
A 		9
avr 4.1
(-3) 		6.2
(0.1) 		6.4
(0.4) 		8.2
(3) 		4.1
(-3) 		5.4
(-1.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177442_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18460
Sequence Type Exemplar sequence
Representative Public ID ZC53.6 NCBI
Target Description ZC53.6 /REP_DB=WormBase Gene ID /WP=CE07588 /TR=Q23375 /GB=AAB52619.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075950(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075950 NCBI Caenorhabditis elegans ZC53.6 (ZC53.6) mRNA, complete cds. 11/11 None
SNAP00000010001 ENSEMBL cdna:SNAP chromosome:CEL140:X:1917463:1919682:1 11/11 None
GENEFINDER00000010009 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1917463:1919682:1 11/11 None
ZC53.6 ENSEMBL cdna:known chromosome:CEL140:X:1917463:1919682:1 gene:ZC53.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1917462-1919682(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC53.6
Entrez Gene 191070 Entrez gene
SwissProt Q23375 EMBL-EBI
WormBase CE07588 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52619 Hypothetical protein ZC53.6 [Caenorhabditis elegans] ref|NP_508351.1| ZC53.6 [Caenorhabditis elegans] 1.0E-157
blast AAB52619 Hypothetical protein ZC53.6 [Caenorhabditis elegans] ref|NP_508351.1| ZC53.6 [Caenorhabditis elegans] 1.0E-119
blast CAA91760 Hypothetical protein F54F7.7 [Caenorhabditis elegans] ref|NP_509981.2| F54F7.7 [Caenorhabditis elegans] 3.0E-48
blast CAA91760 Hypothetical protein F54F7.7 [Caenorhabditis elegans] ref|NP_509981.2| F54F7.7 [Caenorhabditis elegans] 3.0E-46
blast CAA93538 Hypothetical protein W06D11.4 [Caenorhabditis elegans] ref|NP_510056.1| W06D11.4 [Caenorhabditis elegans] 1.0E-42
blast CAA93538 Hypothetical protein W06D11.4 [Caenorhabditis elegans] ref|NP_510056.1| W06D11.4 [Caenorhabditis elegans] 1.0E-40
blast CAA91760 Hypothetical protein F54F7.7 [Caenorhabditis elegans] ref|NP_509981.2| F54F7.7 [Caenorhabditis elegans] 3.0E-36
Sequence
Target Sequence 
>C. ELEGANS:177442_AT
gaaccaactgttgtcgatctgcgaggagcttgaagtgggcacggatgacatctttgctga
cctgggctcaggagttgggcaaactgtgctcttcttgtctgcgtttgctggagtcaagaa
atctatcggatttgagataatgcagtatcctagcaagtgtgcagagcttaaccgatcgca
ttttatttcactaatgaagcacttgggaaaagcacctcttgagatcaagctgattcatgg
aagcttcttggatgctgaagcagttgaattgattaccagtgaagctacgctgttgtttat
gaacaacgtgaagttcgatccgccattgatgctcaattcggagaatctattcaaaaagtg
caaggtgggaaccagaatcatttccacctcggagtttgtgaatcgtggaagatctccaga
agctagcaatgcttggacttctcaactcgccagcatcacttccaccaaaaagctgcgatc
agtgtcaaataacgtgagctggaccggattaactcagcagttctacttgacaactatcca
ttctgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACCAACTGTTGTCGATCTGCGAG 409 345 315 Antisense
CACGGATGACATCTTTGCTGACCTG 459 199 354 Antisense
AGTTGGGCAAACTGTGCTCTTCTTG 447 63 387 Antisense
TCTTCTTGTCTGCGTTTGCTGGAGT 703 615 404 Antisense
AAGTGTGCAGAGCTTAACCGATCGC 70 159 469 Antisense
AACCGATCGCATTTTATTTCACTAA 606 145 484 Antisense
ACAACGTGAAGTTCGATCCGCCATT 221 113 617 Antisense
GATCCGCCATTGATGCTCAATTCGG 175 417 631 Antisense
GAATCATTTCCACCTCGGAGTTTGT 368 323 689 Antisense
AGCAATGCTTGGACTTCTCAACTCG 57 77 739 Antisense
CTACTTGACAACTATCCATTCTGCG 218 227 837 Antisense
Sequence Source Affymetrix Proprietary Database