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[177441_at] 7TM receptor, sre family

Description F15A4.1 /REP_DB=WormBase Gene ID /WP=CE23654 /TR=O17816 /GB=CAB02945.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 59      6grp_cgc > 80      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 3.6
(-3)
A 		23.3
(1.8)
A 		28
(3)
A 		5.9
(-2.4)
A 		24
B 39.1
(3)
A 		36.3
(2.5)
A 		10.9
(-1.9)
A 		4.3
(-3)
A 		35
C 21.5
(-3)
A 		25.6
(-1.9)
A 		44.8
(3)
A 		26.9
(-1.6)
A 		23
avr 21.4
(0.4) 		28.4
(3) 		27.9
(2.8) 		12.4
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 34.6
(3)
A 		12.8
(-1.9)
A 		8.1
(-2.9)
A 		17.4
(-0.9)
A 		29.6
(1.9)
A 		7.8
(-3)
A 		27
B 29.8
(1.6)
A 		5.9
(-3)
A 		36.8
(3)
A 		16.9
(-0.9)
A 		25.9
(0.9)
A 		8.8
(-2.4)
A 		31
C 42.1
(3)
A 		36.7
(2.2)
A 		40.9
(2.8)
A 		3.1
(-3)
A 		17.5
(-0.8)
A 		14.5
(-1.2)
A 		39
avr 35.5
(3) 		18.5
(-1.1) 		28.6
(1.4) 		12.5
(-2.5) 		24.3
(0.3) 		10.4
(-3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 1.3
(-2.6)
A 		5.1
(0.9)
A 		7.3
(3)
A 		0.9
(-3)
A 		6
B 12.5
(3)
A 		9
(1.2)
A 		2.5
(-2.2)
A 		0.9
(-3)
A 		12
C 7.1
(-1.6)
A 		7.4
(-1.4)
A 		15.6
(3)
A 		4.5
(-3)
A 		11
avr 7
(1.6) 		7.2
(1.8) 		8.5
(3) 		2.1
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 6.4
(0.9)
A 		4.6
(-0.6)
A 		1.8
(-3)
A 		4.4
(-0.8)
A 		8.9
(3)
A 		1.9
(-2.9)
A 		7
B 10.4
(2.9)
A 		2
(-3)
A 		8.9
(1.9)
A 		4.5
(-1.2)
A 		10.5
(3)
A 		3.3
(-2.1)
A 		9
C 15.6
(3)
A 		11.2
(1.2)
A 		10.4
(0.9)
A 		0.6
(-3)
A 		5.7
(-1)
A 		4.8
(-1.3)
A 		15
avr 10.8
(3) 		5.9
(-0.9) 		7
(-0) 		3.2
(-3) 		8.4
(1.1) 		3.3
(-2.9) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177441_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3999
Sequence Type Exemplar sequence
Representative Public ID F15A4.1 NCBI
Target Description F15A4.1 /REP_DB=WormBase Gene ID /WP=CE23654 /TR=O17816 /GB=CAB02945.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064250(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064250 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-38) (sre-38) mRNA, complete cds. 11/11 None
GENEFINDER00000042562 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12457475:12459413:1 11/11 None
F15A4.1 ENSEMBL cdna:known chromosome:CEL140:II:12457478:12459413:1 gene:F15A4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12457474-12459410(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, sre family
Gene Symbol sre-38
Ensembl F15A4.1
Entrez Gene 184510 Entrez gene
SwissProt O17816 EMBL-EBI
WormBase CE23654 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02945 Hypothetical protein F15A4.1 [Caenorhabditis elegans] ref|NP_496651.1| Serpentine Receptor, class E (epsilon) family member (sre-38) [Caenorhabditis elegans] sp|O17816|SRE38_CAEEL Serpentine receptor class epsilon-38 (Protein sre-38) 0.0
blast CAE73499 Hypothetical protein CBG20956 [Caenorhabditis briggsae] 1.0E-135
blast NP_496614 Serpentine Receptor, class E (epsilon) family member (sre-51) [Caenorhabditis elegans] gb|AAK73859.5| Serpentine receptor, class e (epsilon) protein 51 [Caenorhabditis elegans] 5.0E-62
blast NP_496614 Serpentine Receptor, class E (epsilon) family member (sre-51) [Caenorhabditis elegans] gb|AAK73859.5| Serpentine receptor, class e (epsilon) protein 51 [Caenorhabditis elegans] 2.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 2.2E-97
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 6.7E-95
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496651.1 7 25-47,68-90,124-146,167-189,194-216,257-279,294-316
F15A4.1 7 25-47,68-90,124-146,167-189,194-216,257-279,294-316
GENEFINDER00000042562 7 26-48,69-91,125-147,168-190,195-217,258-280,295-317
Sequence
Target Sequence 
>C. ELEGANS:177441_AT
tatatcccagtcttcttgatcacttcaactcacctcataaccttaaccttctcctatttt
gtgctcaccaacagaaccggcttctacctgggcacttcaccatgttttctcaactccgcg
cttgttgttatgacgttcctagcagtatggaaagtgaataagcacagacacgaaaaacta
gaaggctcgggccccggttgcgattacactttgtctcagcaattccaagtccgggagaat
taccgcgcgcttaagctcgcaaaaaatctggtgatcgtggtgttgtgtgcaatttcggtg
ccctgcgcgctgcttatttgtctcgtaatcggtgcaattccgtcatttcgaatgatattt
atccatattatggagaattttatttatttaaaccccgtgataatctgctcgacgttgatg
ttcagcgcgccagcttggcgcgccgagtacctgaaacttattcccggctacaagaagatc
aaatccacgagagttttcgtggtgagacccaagccacagacgacgcatcgtgcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATATCCCAGTCTTCTTGATCACTT 359 661 511 Antisense
ACTCCGCGCTTGTTGTTATGACGTT 106 99 623 Antisense
GGTTGCGATTACACTTTGTCTCAGC 482 507 706 Antisense
AGTCCGGGAGAATTACCGCGCGCTT 511 59 738 Antisense
TTACCGCGCGCTTAAGCTCGCAAAA 147 683 750 Antisense
TGTTGTGTGCAATTTCGGTGCCCTG 629 561 791 Antisense
GCTGCTTATTTGTCTCGTAATCGGT 266 297 819 Antisense
TAAACCCCGTGATAATCTGCTCGAC 397 639 899 Antisense
TGCTCGACGTTGATGTTCAGCGCGC 491 581 916 Antisense
GAGTACCTGAAACTTATTCCCGGCT 560 399 955 Antisense
AAGCCACAGACGACGCATCGTGCAT 215 149 1021 Antisense
Sequence Source Affymetrix Proprietary Database