[Home] | [Total List]

[177440_at]

Description K08F4.5 /REP_DB=WormBase Gene ID /WP=CE06153 /TR=Q21354 /GB=CAA93085.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 13      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 27.2
(2.9)
A 		4.2
(-3)
A 		27.5
(3)
A 		16.7
(0.2)
A 		23
B 46.4
(2.5)
A 		30.8
(0.4)
A 		5.4
(-3)
A 		49.9
(3)
A 		45
C 22.4
(-1.8)
A 		4.1
(-3)
A 		4.2
(-3)
A 		95.5
(3)
P 		91
avr 32
(-0.2) 		13
(-2.9) 		12.4
(-3) 		54
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 6.1
(-2.8)
A 		32
(-1.4)
A 		45.8
(-0.7)
A 		1.5
(-3)
A 		66.6
(0.4)
A 		115
(3)
M 		114
B 26
(-1.9)
A 		1.8
(-3)
A 		1.8
(-3)
A 		6.3
(-2.8)
A 		46.6
(-1)
A 		133.3
(3)
P 		132
C 2.3
(-3)
A 		6.2
(-2.8)
A 		3.1
(-3)
A 		22
(-2.1)
A 		38
(-1.4)
A 		138.5
(3)
P 		136
avr 11.5
(-2.9) 		13.3
(-2.8) 		16.9
(-2.6) 		9.9
(-3) 		50.4
(-1) 		128.9
(3) 		119
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 9.9
(3)
A 		0.9
(-3)
A 		7.2
(1.2)
A 		2.5
(-1.9)
A 		9
B 14.8
(3)
A 		7.6
(-0.2)
A 		1.3
(-3)
A 		10.6
(1.1)
A 		14
C 7.4
(-0.5)
A 		1.2
(-3)
A 		1.5
(-2.9)
A 		16.1
(3)
P 		15
avr 10.7
(3) 		3.2
(-3) 		3.3
(-2.9) 		9.7
(2.2) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 1.1
(-2.8)
A 		11.4
(-0.6)
A 		10
(-0.9)
A 		0.4
(-3)
A 		20.1
(1.3)
A 		28
(3)
M 		28
B 9
(-2)
A 		0.6
(-3)
A 		0.4
(-3)
A 		1.7
(-2.8)
A 		18.9
(-0.7)
A 		49.7
(3)
P 		49
C 0.9
(-3)
A 		1.9
(-2.9)
A 		0.8
(-3)
A 		4.4
(-2.5)
A 		12.3
(-1.5)
A 		46.4
(3)
P 		46
avr 3.7
(-2.8) 		4.6
(-2.6) 		3.7
(-2.8) 		2.2
(-3) 		17.1
(-0.7) 		41.4
(3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177440_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9796
Sequence Type Exemplar sequence
Representative Public ID K08F4.5 NCBI
Target Description K08F4.5 /REP_DB=WormBase Gene ID /WP=CE06153 /TR=Q21354 /GB=CAA93085.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069444(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069444 NCBI Caenorhabditis elegans K08F4.5 (K08F4.5) mRNA, complete cds. 11/11 None
SNAP00000005858 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10135039:10135835:-1 11/11 None
GENEFINDER00000005874 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10135039:10135835:-1 11/11 None
K08F4.5 ENSEMBL cdna:known chromosome:CEL140:IV:10134903:10135835:-1 gene:K08F4.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019093 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10135044-10135841(-) 65.43 100.0
Public Domain and Genome References
Gene Title
Ensembl K08F4.5
Entrez Gene 187164 Entrez gene
SwissProt Q21354 EMBL-EBI
WormBase CE06153 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93085 Hypothetical protein K08F4.5 [Caenorhabditis elegans] ref|NP_501845.1| K08F4.5 [Caenorhabditis elegans] 2.0E-18
blast CAI79177 Hypothetical protein T13F3.8 [Caenorhabditis elegans] ref|NP_001024138.1| T13F3.8 [Caenorhabditis elegans] 7.0E-9
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501845.1 1 10-27
K08F4.5 1 10-27
SNAP00000005858 1 10-27
GENEFINDER00000005874 1 10-27
Sequence
Target Sequence 
>C. ELEGANS:177440_AT
ttcatggcttggcccaactattggtattggtttttactctcgtcgttactgcccatctct
gtggcaagaagggcgcaaagaacaaaaagaaggaggacaagacaaaagcaatgtcggcta
tcaaaaccaccacaatgggttctactacagccaacatgcatccagcagagcctgtagtgg
agaaaaaagaggaaccaaaggagaaagttccagagaaaaaggaggaggaaaagaaggacg
ccacaaagaaggaggaagctaaagaggagaagaaggaagaggaaaggaaggaggaaaaga
aggaagagtcgaaggaaggggagaagaagaattcaggtgaagagaagaaaaatagtggag
atgagaagaaggaggaaggaggaaagaaggatgatgctaaggatggggagaaaaaggaag
aagctaaggaaggagataagaaggatgaggatcagaagccaaagaaggagattgtgccag
aagtcttcaaaagaacttctaaagaaaaagcgattgctgatggtgtcaagaagaagaaga
cggactatccaactatggaggacgttccaagtgattggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCATGGCTTGGCCCAACTATTGGT 437 683 32 Antisense
TGGTATTGGTTTTTACTCTCGTCGT 511 551 53 Antisense
GTTACTGCCCATCTCTGTGGCAAGA 112 447 76 Antisense
CCATCTCTGTGGCAAGAAGGGCGCA 419 267 84 Antisense
ATGTCGGCTATCAAAACCACCACAA 394 49 142 Antisense
ACCACCACAATGGGTTCTACTACAG 104 87 157 Antisense
CTACTACAGCCAACATGCATCCAGC 21 227 173 Antisense
ATGCATCCAGCAGAGCCTGTAGTGG 634 41 187 Antisense
AAGCGATTGCTGATGGTGTCAAGAA 139 149 539 Antisense
GAAGACGGACTATCCAACTATGGAG 282 335 567 Antisense
ATGGAGGACGTTCCAAGTGATTGGG 330 49 586 Antisense
Sequence Source Affymetrix Proprietary Database