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[177437_at]

Description K02E2.7 /REP_DB=WormBase Gene ID /WP=CE18842 /TR=Q9XUV5 /GB=CAB04544.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 26      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 3.7
(-3)
A 		48.1
(1.8)
A 		17.3
(-1.5)
A 		58.9
(3)
A 		55
B 16.1
(-1.7)
A 		28.9
(0.3)
A 		7.6
(-3)
A 		46
(3)
P 		38
C 3
(-3)
A 		34.2
(2.5)
A 		17.8
(-0.4)
A 		37
(3)
A 		34
avr 7.6
(-3) 		37.1
(1.5) 		14.2
(-2) 		47.3
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 11.7
(-3)
A 		17.3
(-2.5)
A 		22.2
(-2.1)
A 		79.4
(3)
P 		49.2
(0.3)
A 		26.8
(-1.7)
A 		68
B 14.1
(-3)
A 		14.6
(-2.9)
A 		37.1
(1.4)
M 		35.5
(1.1)
M 		45.4
(3)
P 		34.9
(1)
P 		31
C 26.7
(-1.6)
A 		16.4
(-3)
A 		38.1
(0)
A 		59.2
(3)
A 		36.8
(-0.1)
A 		28
(-1.4)
A 		43
avr 17.5
(-2.8) 		16.1
(-3) 		32.5
(-0.7) 		58
(3) 		43.8
(1) 		29.9
(-1) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.3
(-3)
A 		10.4
(3)
A 		4.5
(-0.9)
A 		8.6
(1.8)
A 		9
B 5.1
(-0.5)
A 		7.1
(1)
A 		1.8
(-3)
A 		9.8
(3)
P 		8
C 1
(-3)
A 		9.8
(3)
A 		6.2
(0.5)
A 		6.2
(0.5)
A 		9
avr 2.5
(-3) 		9.1
(3) 		4.2
(-1.5) 		8.2
(2.2) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 2.2
(-3)
A 		6.2
(-1.7)
A 		4.8
(-2.1)
A 		20.1
(3)
P 		14.8
(1.2)
A 		6.5
(-1.6)
A 		18
B 4.9
(-3)
A 		4.9
(-3)
A 		9
(-1.2)
M 		9.4
(-1)
M 		18.5
(3)
P 		13
(0.6)
P 		14
C 9.9
(1.3)
A 		5
(-3)
A 		9.7
(1.1)
A 		11.9
(3)
A 		11.9
(3)
A 		9.4
(0.8)
A 		7
avr 5.7
(-2.8) 		5.4
(-3) 		7.8
(-1.5) 		13.8
(2.2) 		15.1
(3) 		9.6
(-0.4) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177437_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14475
Sequence Type Exemplar sequence
Representative Public ID K02E2.7 NCBI
Target Description K02E2.7 /REP_DB=WormBase Gene ID /WP=CE18842 /TR=Q9XUV5 /GB=CAB04544.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075527(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075527 NCBI Caenorhabditis elegans K02E2.7 (K02E2.7) mRNA, complete cds. 11/11 None
SNAP00000027379 ENSEMBL cdna:SNAP chromosome:CEL140:V:20381734:20383841:-1 11/11 None
GENEFINDER00000027380 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20382820:20383580:-1 11/11 None
K02E2.7 ENSEMBL cdna:known chromosome:CEL140:V:20382820:20383407:-1 gene:K02E2.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20382819-20383407(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02E2.7
Entrez Gene 186882 Entrez gene
SwissProt Q9XUV5 EMBL-EBI
WormBase CE18842 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04544 Hypothetical protein K02E2.7 [Caenorhabditis elegans] ref|NP_507928.1| K02E2.7 [Caenorhabditis elegans] 2.0E-62
blast CAB04544 Hypothetical protein K02E2.7 [Caenorhabditis elegans] ref|NP_507928.1| K02E2.7 [Caenorhabditis elegans] 4.0E-62
blast CAB04544 Hypothetical protein K02E2.7 [Caenorhabditis elegans] ref|NP_507928.1| K02E2.7 [Caenorhabditis elegans] 2.0E-57
Sequence
Target Sequence 
>C. ELEGANS:177437_AT
ttcaaacttcaaaagcccggagccggaacttcaaccaatttccccgccaccctcaataca
tgatgaccttataaatgacatggatggcggaatgtttggttctgaaaaaactgacgattc
aagtttggaagacttgcagcttcatgtacaagaaatggacaagaatactatgttaacaga
aaatttcgatcaagatcaagaagaactgaaactttttgtgcaagaactagagcaaaacgc
tgctgaaacaattaacaattcctctcaccaactcgaaaatgctctgaaagctgaagaaaa
tattgaaactgaaatctctgaagaagaagctagcgacgatgaagaggaagacaatttcca
cacaatgctccaagaacaagctgcacgtcacaaggaagaaatggaaaaagtcatgaaaaa
acgggcggagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAAACTTCAAAAGCCCGGAGCCG 415 669 18 Antisense
CGCCACCCTCAATACATGATGACCT 86 257 62 Antisense
GGATGGCGGAATGTTTGGTTCTGAA 203 513 99 Antisense
GGAAGACTTGCAGCTTCATGTACAA 513 531 144 Antisense
GAACTGAAACTTTTTGTGCAAGAAC 281 347 220 Antisense
GCAAAACGCTGCTGAAACAATTAAC 335 317 249 Antisense
AACAATTAACAATTCCTCTCACCAA 402 133 264 Antisense
ATTCCTCTCACCAACTCGAAAATGC 155 9 275 Antisense
ACAATGCTCCAAGAACAAGCTGCAC 187 115 379 Antisense
GAACAAGCTGCACGTCACAAGGAAG 128 353 391 Antisense
AAGTCATGAAAAAACGGGCGGAGCA 116 157 425 Antisense
Sequence Source Affymetrix Proprietary Database