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[177436_at]

Description C30H6.3 /REP_DB=WormBase Gene ID /WP=CE15647 /TR=O45274 /GB=CAB02807.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 37      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 54.8
(2.6)
P 		41.6
(1.1)
A 		5.6
(-3)
A 		58.2
(3)
A 		53
B 77.6
(3)
P 		48.3
(0.7)
A 		12.1
(-2.2)
A 		1.3
(-3)
A 		76
C 43.5
(2.1)
A 		44.5
(2.4)
A 		21.8
(-3)
A 		47.2
(3)
A 		25
avr 58.6
(3) 		44.8
(1.2) 		13.2
(-3) 		35.6
(-0) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 71
(3)
M 		68.1
(2.6)
P 		41.7
(-0.7)
P 		31.4
(-2)
A 		23.1
(-3)
A 		33.2
(-1.7)
A 		48
B 62.2
(3)
P 		55.3
(2.3)
P 		47.2
(1.5)
A 		40.2
(0.8)
A 		25.7
(-0.7)
M 		2.4
(-3)
A 		60
C 53.3
(1.4)
P 		49.4
(0.9)
P 		28.9
(-1.7)
A 		65.5
(3)
A 		22.8
(-2.5)
A 		19.1
(-3)
A 		46
avr 62.2
(3) 		57.6
(2.4) 		39.3
(-0.1) 		45.7
(0.8) 		23.9
(-2.2) 		18.2
(-3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 20
(3)
P 		9
(-0.6)
A 		1.5
(-3)
A 		8.5
(-0.7)
A 		19
B 24.7
(3)
P 		11.9
(-0.1)
A 		2.8
(-2.4)
A 		0.3
(-3)
A 		24
C 14.4
(3)
A 		12.8
(1.6)
A 		7.6
(-3)
A 		8
(-2.6)
A 		7
avr 19.7
(3) 		11.2
(-0.2) 		4
(-3) 		5.6
(-2.4) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 13.1
(-0.9)
M 		24.2
(3)
P 		9.1
(-2.3)
P 		8
(-2.7)
A 		7
(-3)
A 		8.1
(-2.6)
A 		17
B 21.6
(3)
P 		18.4
(2.1)
P 		11.5
(0.1)
A 		10.6
(-0.2)
A 		10.4
(-0.2)
M 		0.9
(-3)
A 		21
C 19.8
(3)
P 		15.1
(0.9)
P 		7.4
(-2.6)
A 		13.2
(0)
A 		7.4
(-2.6)
A 		6.4
(-3)
A 		13
avr 18.2
(2.6) 		19.2
(3) 		9.3
(-1.2) 		10.6
(-0.7) 		8.3
(-1.6) 		5.1
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177436_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9370
Sequence Type Exemplar sequence
Representative Public ID C30H6.3 NCBI
Target Description C30H6.3 /REP_DB=WormBase Gene ID /WP=CE15647 /TR=O45274 /GB=CAB02807.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070693(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070693 NCBI Caenorhabditis elegans C30H6.3 (C30H6.3) mRNA, complete cds. 11/11 None
GENEFINDER00000029665 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17358859:17360590:1 11/11 None
C30H6.3 ENSEMBL cdna:known chromosome:CEL140:IV:17359308:17360590:1 gene:C30H6.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029646 3/11 Cross Hyb Matching Probes None
SNAP00000029647 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17359288-17360596(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C30H6.3
Entrez Gene 183066 Entrez gene
SwissProt O45274 EMBL-EBI
WormBase CE31161 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02807 Hypothetical protein C30H6.3 [Caenorhabditis elegans] ref|NP_503094.2| C30H6.3 [Caenorhabditis elegans] 3.0E-93
blast CAB02807 Hypothetical protein C30H6.3 [Caenorhabditis elegans] ref|NP_503094.2| C30H6.3 [Caenorhabditis elegans] 2.0E-76
blast CAB02809 Hypothetical protein C30H6.4 [Caenorhabditis elegans] ref|NP_503095.1| C30H6.4 [Caenorhabditis elegans] 8.0E-68
blast CAB05164 Hypothetical protein C49C3.13 [Caenorhabditis elegans] ref|NP_503091.2| C49C3.13 [Caenorhabditis elegans] 2.0E-59
blast CAE17706 Hypothetical protein C30H6.11 [Caenorhabditis elegans] ref|NP_001023035.1| C30H6.11 [Caenorhabditis elegans] 7.0E-43
blast CAB02809 Hypothetical protein C30H6.4 [Caenorhabditis elegans] ref|NP_503095.1| C30H6.4 [Caenorhabditis elegans] 4.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 2.1E-8
Sequence
Target Sequence 
>C. ELEGANS:177436_AT
actgcactgcttctattgatatccgggtatactcctggacagtttgatgatatgaaagag
tgctcagaagcagctggatcatatgcactttgcaaatatgatccaaatacatgcaaagtc
ggacttcaactacatcaaaaactacaacaacagtgccaattagtacctttatcatcacta
cacctacaactttgcccgttacggttagtaaaaacgatcaagactacaacagcttccgaa
gctattacttttaccactcaattcgatgcttcaaaatgtcctgttacatgtccgacaaac
tggaaaatacaaggccctggaagactgagcgatttcgctgtagaatgtgaaagttttggc
gggaaactagccagaatacaggatgtccaaacaaacgaaatgttaacaagattcttcagc
actaacaacaacgatgacggagaagcttgggtagtttcctctgggtacagtaatgttgca
aatgggtatgattatgaatcagactcgtgtttagccttgactttgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTGCACTGCTTCTATTGATATCCG 120 99 121 Antisense
GATATCCGGGTATACTCCTGGACAG 292 423 138 Antisense
CAGCTGGATCATATGCACTTTGCAA 674 201 191 Antisense
GTCGGACTTCAACTACATCAAAAAC 522 471 238 Antisense
GTACCTTTATCATCACTACACCTAC 78 459 283 Antisense
TCCGAAGCTATTACTTTTACCACTC 556 595 355 Antisense
TTTACCACTCAATTCGATGCTTCAA 117 675 370 Antisense
AAATGTCCTGTTACATGTCCGACAA 709 119 394 Antisense
CAAGGCCCTGGAAGACTGAGCGATT 424 183 430 Antisense
GAGAAGCTTGGGTAGTTTCCTCTGG 313 359 560 Antisense
ACTCGTGTTTAGCCTTGACTTTGTC 639 97 623 Antisense
Sequence Source Affymetrix Proprietary Database