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[177435_at]

Description C26C6.5 /REP_DB=WormBase Gene ID /WP=CE08399 /TR=O17910 /GB=CAB07229.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 17      4grp_high_8_8 > 0      6grp_total > 17      4grp_total > 63      6grp_cgc > 06      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 292.3
(3)
P 		133.2
(-3)
P 		209
(-0.1)
M 		220.9
(0.3)
P 		159
B 240.1
(3)
P 		153.9
(-2)
A 		191.8
(0.2)
P 		136.3
(-3)
M 		104
C 265.2
(3)
M 		203.4
(0)
A 		244.2
(2)
P 		140.8
(-3)
A 		124
avr 265.9
(3) 		163.5
(-3) 		215
(0) 		166
(-2.9) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 318
1 2 3 4 5 6 range
A 340.7
(3)
P 		240
(-0.2)
P 		186
(-1.9)
P 		164.8
(-2.6)
P 		152
(-3)
A 		225.7
(-0.7)
P 		189
B 271
(3)
P 		207.4
(0.4)
P 		202.1
(0.2)
M 		136.8
(-2.5)
P 		124
(-3)
A 		202
(0.2)
A 		147
C 442
(3)
P 		163.8
(-2.4)
P 		252.9
(-0.7)
P 		134.9
(-3)
A 		179.5
(-2.1)
P 		151.6
(-2.7)
P 		307
avr 351.2
(3) 		203.7
(-1.3) 		213.7
(-1) 		145.5
(-3) 		151.8
(-2.8) 		193.1
(-1.6) 		206
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 106.4
(3)
P 		28.9
(-3)
P 		54.6
(-1)
M 		32.3
(-2.7)
P 		78
B 76.6
(3)
P 		38
(-1.9)
A 		44.4
(-1.1)
P 		29.1
(-3)
M 		48
C 87.8
(3)
M 		58.5
(0.3)
A 		85.1
(2.7)
P 		23.7
(-3)
A 		64
avr 90.3
(3) 		41.8
(-1.7) 		61.4
(0.2) 		28.4
(-3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 62.8
(-0)
P 		85.4
(3)
P 		40.5
(-3)
P 		41.8
(-2.8)
P 		45.9
(-2.3)
A 		55
(-1.1)
P 		45
B 94.3
(3)
P 		69
(0.4)
P 		49.1
(-1.7)
M 		36.2
(-3)
P 		50.4
(-1.5)
A 		75.3
(1)
A 		58
C 163.8
(3)
P 		50
(-2)
P 		64.4
(-1.4)
P 		27.1
(-3)
A 		58.1
(-1.6)
P 		50.8
(-2)
P 		137
avr 107
(3) 		68.1
(-0.2) 		51.3
(-1.6) 		35
(-3) 		51.5
(-1.6) 		60.4
(-0.9) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177435_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1563
Sequence Type Exemplar sequence
Representative Public ID C26C6.5 NCBI
Target Description C26C6.5 /REP_DB=WormBase Gene ID /WP=CE08399 /TR=O17910 /GB=CAB07229.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059710(11), NM_182031(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059710 NCBI Caenorhabditis elegans Deacetylase Complex Protein family member (dcp-66) (dcp-66) mRNA, complete cds. 11/11 None
NM_182031 NCBI Caenorhabditis elegans Deacetylase Complex Protein family member (dcp-66) (dcp-66) mRNA, complete cds. 11/11 None
C26C6.5a ENSEMBL cdna:known chromosome:CEL140:I:7544235:7550284:-1 gene:C26C6.5 11/11 None
C26C6.5b ENSEMBL cdna:known chromosome:CEL140:I:7545903:7550138:-1 gene:C26C6.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003875 8/11 Cross Hyb Matching Probes None
GENEFINDER00000003880 8/11 Cross Hyb Matching Probes None
GENEFINDER00000043604 2/11 Cross Hyb Matching Probes None
SNAP00000043603 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7545833-7550069(-) 100.0 100.0
Public Domain and Genome References
Ensembl C26C6.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96601 Hypothetical protein C26C6.5a [Caenorhabditis elegans] emb|CAB07229.1| Hypothetical protein C26C6.5a [Caenorhabditis elegans] ref|NP_492111.1| Deacetylase Complex Protein family member (dcp-66) [Caenorhabditis elegans] 0.0
blast CAD56560 Hypothetical protein C26C6.5b [Caenorhabditis elegans] emb|CAD56589.1| Hypothetical protein C26C6.5b [Caenorhabditis elegans] ref|NP_871831.1| Deacetylase Complex Protein family member (dcp-66) [Caenorhabditis elegans] 0.0
blast CAE66572 Hypothetical protein CBG11888 [Caenorhabditis briggsae] 1.0E-170
Sequence
Target Sequence 
>C. ELEGANS:177435_AT
gagctttccagaagattacggcacaagaaaaggagttcgaaaagaaaattgccgaaggac
aattggagcagtacgcagaagcaaaagctgcagcacctgctacatctcaaacaataccaa
catcatcaacagcaactgtttcatcaattccacttgtaccacgattaccacaaattccat
catcaactggatcaagtacaccaacacaagcagtcaagacgtcaacaccgatacactcga
caccaaaatcatcaagttcaagtgcaaagaagactgcagcacaattgcaacaacaaagta
tgcaaggaatgaatcaattattcagtacagcaatgttgagaaataatcctcaaatgcaac
aaatgttgcaaatgtaccaagctttagctatgggaggaggggcggcaaatatggcaaata
atcaaatggccatgctattccaagcacaagcaatgcaagctgctcaggctcaagtcgcac
gagctcaggcggcaaaagctcaggctgcacaagctcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCTTTCCAGAAGATTACGGCACA 60 389 1481 Antisense
GCAAAAGCTGCAGCACCTGCTACAT 349 317 1561 Antisense
GCACCTGCTACATCTCAAACAATAC 456 315 1573 Antisense
AATTCCACTTGTACCACGATTACCA 585 177 1626 Antisense
ATTACCACAAATTCCATCATCAACT 680 11 1644 Antisense
GTACACCAACACAAGCAGTCAAGAC 321 461 1676 Antisense
TCAAGACGTCAACACCGATACACTC 173 629 1694 Antisense
ATGGCCATGCTATTCCAAGCACAAG 447 53 1906 Antisense
CTGCTCAGGCTCAAGTCGCACGAGC 338 237 1940 Antisense
TCGCACGAGCTCAGGCGGCAAAAGC 477 589 1955 Antisense
AAAAGCTCAGGCTGCACAAGCTCAG 521 131 1974 Antisense
Sequence Source Affymetrix Proprietary Database