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[177434_at]

Description F35E2.4 /REP_DB=WormBase Gene ID /WP=CE17773 /TR=O62226 /GB=CAB04284.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 36      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 9.8
(-1.9)
A 		12.2
(-0.9)
A 		7.3
(-3)
A 		21.4
(3)
A 		14
B 45.2
(0.5)
A 		68.3
(3)
A 		12.9
(-3)
A 		46.8
(0.7)
A 		55
C 38.5
(-2.8)
A 		52.7
(3)
A 		40.6
(-1.9)
A 		37.9
(-3)
A 		15
avr 31.2
(-0.3) 		44.4
(3) 		20.3
(-3) 		35.4
(0.8) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 6.2
(-2.7)
A 		8.9
(-2.1)
A 		6.7
(-2.6)
A 		32.5
(3)
A 		4.9
(-3)
A 		22
(0.7)
A 		28
B 26.9
(0.8)
A 		22.5
(0.1)
A 		9.3
(-2.2)
A 		4.4
(-3)
A 		39.6
(3)
A 		35.6
(2.3)
A 		35
C 24
(1.3)
A 		21.3
(0.7)
A 		3.6
(-3)
A 		32
(3)
A 		5.8
(-2.5)
A 		29.2
(2.4)
A 		28
avr 19
(0.3) 		17.6
(-0) 		6.5
(-3) 		23
(1.4) 		16.8
(-0.2) 		28.9
(3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 3.6
(3)
A 		2.7
(-0.2)
A 		1.9
(-3)
A 		3.1
(1.2)
A 		2
B 14.4
(1.9)
A 		16.9
(3)
A 		3
(-3)
A 		10
(0)
A 		14
C 12.8
(1.4)
A 		15.2
(3)
A 		14.2
(2.3)
A 		6.4
(-3)
A 		9
avr 10.3
(1.5) 		11.6
(3) 		6.4
(-3) 		6.5
(-2.9) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.1
(-3)
A 		3.2
(-1.2)
A 		1.5
(-2.7)
A 		8.2
(3)
A 		1.5
(-2.7)
A 		5.4
(0.6)
A 		7
B 9.4
(0.3)
A 		7.5
(-0.5)
A 		2.2
(-2.6)
A 		1.2
(-3)
A 		16.1
(3)
A 		13.3
(1.9)
A 		15
C 8.9
(2.4)
A 		6.5
(0.8)
A 		0.9
(-3)
A 		6.4
(0.7)
A 		1.9
(-2.3)
A 		9.8
(3)
A 		9
avr 6.5
(0.8) 		5.7
(0.2) 		1.5
(-3) 		5.3
(-0.2) 		6.5
(0.8) 		9.5
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177434_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.423
Sequence Type Exemplar sequence
Representative Public ID F35E2.4 NCBI
Target Description F35E2.4 /REP_DB=WormBase Gene ID /WP=CE17773 /TR=O62226 /GB=CAB04284.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000041147 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11738444:11742531:-1 10/11 None
SNAP00000041134 ENSEMBL cdna:SNAP chromosome:CEL140:I:11740682:11742531:-1 10/11 None
F35E2.4 ENSEMBL cdna:pseudogene chromosome:CEL140:I:11742062:11742531:-1 gene:F35E2.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11741992-11742462(-) 100.0 100.0
Public Domain and Genome References
Ensembl F35E2.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T21778 hypothetical protein F35E2.4 - Caenorhabditis elegans 8.0E-56
blast T21778 hypothetical protein F35E2.4 - Caenorhabditis elegans 2.0E-55
blast CAB04288 Hypothetical protein F35E2.9 [Caenorhabditis elegans] ref|NP_492987.2| F35E2.9 [Caenorhabditis elegans] 2.0E-13
Sequence
Target Sequence 
>C. ELEGANS:177434_AT
ggagacgaccattggaactggattcaagaacaatgaatcgttcacctactttgccaaagc
caaacagatttatggatacctctgcgacttggtgggcatttgctccgaagcttctaccgt
gtctgttccaacagtacctagtccaaaatcaattgcaccgaccttcactgcatcaatttc
caacatatctgaaactaagaaaagcctgaaaaagactaccagaccctcagaggctgagcc
tgggccaaatgaaaaatcaacagaagctgaggagccagactattcggacctggatttaac
tttcagtgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGACGACCATTGGAACTGGATTC 530 519 33 Antisense
CAATGAATCGTTCACCTACTTTGCC 566 181 63 Antisense
GATTTATGGATACCTCTGCGACTTG 179 429 99 Antisense
TCTGCGACTTGGTGGGCATTTGCTC 60 609 113 Antisense
TTCTACCGTGTCTGTTCCAACAGTA 151 689 144 Antisense
CTGTTCCAACAGTACCTAGTCCAAA 366 239 155 Antisense
ACCTTCACTGCATCAATTTCCAACA 609 87 193 Antisense
GACTACCAGACCCTCAGAGGCTGAG 368 373 246 Antisense
AGAGGCTGAGCCTGGGCCAAATGAA 67 59 261 Antisense
TGAGGAGCCAGACTATTCGGACCTG 710 567 300 Antisense
GGACCTGGATTTAACTTTCAGTGCG 271 523 318 Antisense
Sequence Source Affymetrix Proprietary Database