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[177433_at]

Description F19D8.2 /REP_DB=WormBase Gene ID /WP=CE09480 /TR=Q93530 /GB=CAB01739.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 74.1
(-3)
A 		83
(-2.3)
A 		100.4
(-1)
A 		151.7
(3)
A 		78
B 84
(-1)
A 		71.5
(-3)
A 		73.8
(-2.6)
A 		108.2
(3)
A 		37
C 101.3
(3)
A 		77.7
(-3)
A 		86
(-0.9)
A 		86.8
(-0.7)
A 		24
avr 86.5
(-1.6) 		77.4
(-3) 		86.7
(-1.5) 		115.6
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 88.2
(3)
A 		12.9
(-3)
A 		85.2
(2.8)
A 		67.6
(1.4)
A 		62.8
(1)
A 		39.7
(-0.9)
A 		75
B 44.6
(-0.3)
A 		18.4
(-2.6)
A 		57.6
(0.9)
A 		81.7
(3)
A 		25.2
(-2)
A 		13.7
(-3)
A 		68
C 40.1
(-3)
A 		77.8
(0.3)
A 		108.2
(3)
A 		77.6
(0.3)
A 		47.3
(-2.4)
A 		44.3
(-2.6)
A 		68
avr 57.6
(-0.1) 		36.4
(-2.6) 		83.7
(3) 		75.6
(2) 		45.1
(-1.5) 		32.6
(-3) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 27
(3)
A 		18
(-3)
A 		26.3
(2.5)
A 		22.2
(-0.2)
A 		9
B 26.8
(3)
A 		17.7
(-2.6)
A 		17.1
(-3)
A 		23
(0.6)
A 		10
C 33.5
(3)
A 		22.3
(-0.6)
A 		30
(1.9)
A 		14.6
(-3)
A 		19
avr 29.1
(3) 		19.3
(-3) 		24.5
(0.2) 		19.9
(-2.6) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 16.3
(1.9)
A 		4.6
(-3)
A 		18.5
(2.8)
A 		17.2
(2.3)
A 		19
(3)
A 		9.7
(-0.9)
A 		14
B 15.5
(0.8)
A 		6.1
(-2.6)
A 		14
(0.2)
A 		21.6
(3)
A 		10.2
(-1.1)
A 		5.1
(-3)
A 		17
C 14.9
(-3)
A 		23.7
(1.2)
A 		27.5
(3)
A 		15.6
(-2.6)
A 		15.3
(-2.8)
A 		14.8
(-3)
A 		13
avr 15.6
(0.4) 		11.5
(-2) 		20
(3) 		18.1
(1.9) 		14.8
(-0.1) 		9.9
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177433_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17608
Sequence Type Exemplar sequence
Representative Public ID F19D8.2 NCBI
Target Description F19D8.2 /REP_DB=WormBase Gene ID /WP=CE09480 /TR=Q93530 /GB=CAB01739.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077905(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077905 NCBI Caenorhabditis elegans F19D8.2 (F19D8.2) mRNA, complete cds. 11/11 None
GENEFINDER00000029199 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13834348:13836012:1 10/11 None
F19D8.2 ENSEMBL cdna:known chromosome:CEL140:X:13834348:13836443:1 gene:F19D8.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029196 7/11 Cross Hyb Matching Probes None
SNAP00000029197 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13834347-13836443(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F19D8.2
Entrez Gene 184683 Entrez gene
SwissProt Q93530 EMBL-EBI
WormBase CE37356 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01739 Hypothetical protein F19D8.2 [Caenorhabditis elegans] ref|NP_510306.2| F19D8.2 [Caenorhabditis elegans] 1.0E-115
blast CAB01739 Hypothetical protein F19D8.2 [Caenorhabditis elegans] ref|NP_510306.2| F19D8.2 [Caenorhabditis elegans] 1.0E-101
blast CAE63079 Hypothetical protein CBG07367 [Caenorhabditis briggsae] 2.0E-25
blast CAE63079 Hypothetical protein CBG07367 [Caenorhabditis briggsae] 3.0E-25
Sequence
Target Sequence 
>C. ELEGANS:177433_AT
taacgactctccagacaagttcttcccagcagatccacgcctgatccaagctcattggga
ttctcaggctgagccacgtcagccaccaactcctccagcatctccagtttctggaatcgc
cacaccatcatctgcaataactgctgagttgtgggagatggagcggtcactaaccccatt
gccgacaagagacagtccaatgccagaaattcaggaccgcggaaatcaacaacattgcaa
catcctcacaacaaaaaaccaacctcaagttgatcaaatttccaacggagggcacatgaa
atcatcgatatcctttcaatacaaagacactccagaatactctttataccgcaaatggtt
tgacgatgatgaattggaattttacctggaaggcatggaatcctggacccgcagaaagaa
gcgtgtgcagtatgaatatgatgatgaagagaaagagattgatgagactccgtgttgctt
cctctgtccaacaagcagagagaatgtcgtcagattcttcacagtgactcgaaaacctaa
gaagtttcgcaggctttactcgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACGACTCTCCAGACAAGTTCTTC 160 639 72 Antisense
CACGCCTGATCCAAGCTCATTGGGA 107 201 107 Antisense
GATTCTCAGGCTGAGCCACGTCAGC 305 431 130 Antisense
CCACACCATCATCTGCAATAACTGC 339 275 191 Antisense
GGGAGATGGAGCGGTCACTAACCCC 257 495 224 Antisense
CTAACCCCATTGCCGACAAGAGACA 29 227 241 Antisense
TCAACAACATTGCAACATCCTCACA 24 631 297 Antisense
GGAAGGCATGGAATCCTGGACCCGC 313 527 459 Antisense
ATTGATGAGACTCCGTGTTGCTTCC 270 5 529 Antisense
TTGCTTCCTCTGTCCAACAAGCAGA 680 703 546 Antisense
AGAAGTTTCGCAGGCTTTACTCGTT 172 75 611 Antisense
Sequence Source Affymetrix Proprietary Database