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[177432_at]

Description Y7A5A.9 /REP_DB=WormBase Gene ID /WP=CE21334 /TR=Q9XVY5 /GB=CAA22469.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 2.7
(-3)
A 		4.9
(-2.8)
A 		3.1
(-3)
A 		74.3
(3)
A 		72
B 24.5
(-0.5)
A 		3.5
(-2.9)
A 		2.6
(-3)
A 		55.6
(3)
A 		53
C 3.9
(-3)
A 		7.9
(-2.6)
A 		4.3
(-3)
A 		59.9
(3)
A 		56
avr 10.4
(-2.3) 		5.4
(-2.8) 		3.3
(-3) 		63.3
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 6
(-2.8)
A 		12.1
(-0.6)
A 		22.1
(3)
A 		5.5
(-3)
A 		8.8
(-1.8)
A 		12.3
(-0.5)
A 		17
B 4.6
(-3)
A 		7.8
(-0.7)
A 		5.3
(-2.5)
A 		6.7
(-1.5)
A 		5.2
(-2.6)
A 		13
(3)
A 		8
C 5
(2.2)
A 		5.2
(2.6)
A 		4.2
(0.5)
A 		2.5
(-3)
A 		4.2
(0.5)
A 		5.4
(3)
A 		3
avr 5.2
(-2.7) 		8.4
(0.8) 		10.5
(3) 		4.9
(-3) 		6.1
(-1.7) 		10.2
(2.7) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1
(-2.9)
A 		1.1
(-2.8)
A 		0.8
(-3)
A 		10.9
(3)
A 		10
B 7.8
(0.9)
A 		0.9
(-2.8)
A 		0.6
(-3)
A 		11.8
(3)
A 		11
C 1.3
(-3)
A 		2.3
(-2.3)
A 		1.5
(-2.9)
A 		10.1
(3)
A 		9
avr 3.4
(-1.5) 		1.4
(-2.8) 		1
(-3) 		10.9
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.1
(-3)
A 		4.3
(2.2)
A 		4.8
(3)
A 		1.4
(-2.5)
A 		2.7
(-0.4)
A 		3
(0.1)
A 		4
B 1.6
(-2.5)
A 		2.6
(-0.8)
A 		1.3
(-3)
A 		1.8
(-2.1)
A 		2.1
(-1.6)
A 		4.8
(3)
A 		4
C 1.8
(3)
A 		1.6
(2.1)
A 		1.1
(-0.2)
A 		0.5
(-3)
A 		1.4
(1.2)
A 		1.8
(3)
A 		1
avr 1.5
(-2.1) 		2.8
(1.8) 		2.4
(0.6) 		1.2
(-3) 		2.1
(-0.3) 		3.2
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177432_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17560
Sequence Type Exemplar sequence
Representative Public ID Y7A5A.9 NCBI
Target Description Y7A5A.9 /REP_DB=WormBase Gene ID /WP=CE21334 /TR=Q9XVY5 /GB=CAA22469.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078201(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078201 NCBI Caenorhabditis elegans Y7A5A.9 (Y7A5A.9) mRNA, complete cds. 11/11 None
GENEFINDER00000028091 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15826562:15829719:1 11/11 None
Y7A5A.9 ENSEMBL cdna:known chromosome:CEL140:X:15826562:15829689:1 gene:Y7A5A.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028088 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15826561-15829689(+) 97.83 100.0
Public Domain and Genome References
Gene Title
Ensembl Y7A5A.9
Entrez Gene 189388 Entrez gene
SwissProt Q9XVY5 EMBL-EBI
WormBase CE21334 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22469 Hypothetical protein Y7A5A.9 [Caenorhabditis elegans] ref|NP_510602.1| Y7A5A.9 [Caenorhabditis elegans] 0.0
blast CAA22469 Hypothetical protein Y7A5A.9 [Caenorhabditis elegans] ref|NP_510602.1| Y7A5A.9 [Caenorhabditis elegans] 1.0E-158
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510602.1 1 13-35
Y7A5A.9 1 13-35
GENEFINDER00000028091 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:177432_AT
agcactgaccatccagtttgcagcaaacacgattgtgagcctaagaaaaactagattgtc
ggaaaattcacaagatggaaagaggctgtccgggaagatgaaagtccaattgttcgccat
gaaaaatcgtctaacttttatcaaaacagttgtggccaacgtcaaagggaacgaaacgag
ttgttccaaaaaagaacatgaactgatgatggcttcaagaccgaaatctggagagcattg
taccgatgatgctagctctgcagctactactctcttcaactttgaggtttttgccaaatt
acacccaagagcagacagaagttctggaacttattgtgaaaatctgaaggaagcttataa
cgttgatctcaagaagaaagatgtagaaattgctcaattgaaaactcagcttcaggacgt
ttactatcagagggaaattgtggcctcactatcagcgatgatcagtcgaatgttagttct
gataatagcgacggtacaagttgacaatttttttgggaaaatacataaattgattgtttc
aggaagcagtagaagtaaagcggcgccaattaaacacgatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCACTGACCATCCAGTTTGCAGCA 437 77 453 Antisense
GCAGCAAACACGATTGTGAGCCTAA 708 311 472 Antisense
GAAAGTCCAATTGTTCGCCATGAAA 5 361 552 Antisense
GATGGCTTCAAGACCGAAATCTGGA 90 407 660 Antisense
ATTGTACCGATGATGCTAGCTCTGC 278 5 689 Antisense
GATGCTAGCTCTGCAGCTACTACTC 420 413 700 Antisense
GCTACTACTCTCTTCAACTTTGAGG 111 303 715 Antisense
AGGAAGCTTATAACGTTGATCTCAA 266 55 800 Antisense
ACTCAGCTTCAGGACGTTTACTATC 183 99 856 Antisense
AATTGTGGCCTCACTATCAGCGATG 268 179 888 Antisense
AAGCGGCGCCAATTAAACACGATCA 339 149 1010 Antisense
Sequence Source Affymetrix Proprietary Database