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[177431_at]

Description C53C7.2 /REP_DB=WormBase Gene ID /WP=CE19768 /TR=Q9XXU3 /GB=CAA15514.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 65      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 88      6grp_total > 65      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2978
1 2 3 4 range
A 1568.5
(-0.8)
P 		512.2
(-3)
P 		498.8
(-3)
P 		3369.2
(3)
P 		2870
B 1026.8
(-1.5)
P 		471.9
(-2.8)
P 		390.8
(-3)
P 		2909.6
(3)
P 		2519
C 1602.3
(0)
P 		583.4
(-3)
P 		668.8
(-2.7)
P 		2611.1
(3)
P 		2028
avr 1399.2
(-0.8) 		522.5
(-3) 		519.5
(-3) 		2963.3
(3) 		2444

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2505
1 2 3 4 5 6 range
A 912.4
(-2.8)
P 		846.6
(-3)
P 		2443.4
(3)
P 		924.6
(-2.7)
P 		1153.9
(-1.8)
P 		1226.5
(-1.6)
P 		1597
B 1535.5
(-0.8)
P 		1126.9
(-1.9)
P 		2045.3
(0.4)
P 		1568
(-0.8)
P 		680.2
(-3)
P 		3060.1
(3)
P 		2380
C 582.2
(-2.9)
P 		1280.7
(-1)
P 		1236.1
(-1.2)
P 		1465.4
(-0.5)
P 		555.6
(-3)
P 		2766.3
(3)
P 		2211
avr 1010
(-2.2) 		1084.7
(-1.9) 		1908.3
(1.3) 		1319.3
(-1) 		796.6
(-3) 		2351
(3) 		1554
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 530
1 2 3 4 range
A 571.1
(3)
P 		111.2
(-3)
P 		130.4
(-2.7)
P 		493.2
(2)
P 		460
B 327.4
(-0.3)
P 		116.6
(-2.7)
P 		90.5
(-3)
P 		620
(3)
P 		530
C 530.4
(3)
P 		167.7
(-3)
P 		233.1
(-1.9)
P 		440.3
(1.5)
P 		363
avr 476.3
(2.4) 		131.8
(-3) 		151.3
(-2.7) 		517.8
(3) 		386

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 973
1 2 3 4 5 6 range
A 168.2
(-3)
P 		301.1
(-0.8)
P 		532.1
(3)
P 		234.5
(-1.9)
P 		348.2
(-0)
P 		298.6
(-0.8)
P 		364
B 534.3
(-1.2)
P 		375.1
(-2.3)
P 		496.7
(-1.5)
P 		415.3
(-2)
P 		276.4
(-3)
P 		1141.1
(3)
P 		865
C 215.8
(-2.7)
P 		390.8
(-1.3)
P 		314.6
(-1.9)
P 		294.7
(-2.1)
P 		179.8
(-3)
P 		926
(3)
P 		746
avr 306.1
(-2.6) 		355.7
(-2) 		447.8
(-0.9) 		314.8
(-2.5) 		268.1
(-3) 		788.6
(3) 		521
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177431_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17543
Sequence Type Exemplar sequence
Representative Public ID C53C7.2 NCBI
Target Description C53C7.2 /REP_DB=WormBase Gene ID /WP=CE19768 /TR=Q9XXU3 /GB=CAA15514.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000019818 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13039836:13043722:1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13039835-13043722(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T20185 hypothetical protein C53C7.2 - Caenorhabditis elegans 9.0E-87
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000019818 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:177431_AT
gcagtttaacctaattggcctacaaaatggaaattttctagtaccatcgaaaggaagttt
tcatgaaacaaaaaccaaaaaaaaaattaaaaaaaataaaaaaaaacgttcaaacctgaa
agttctccaagcaatttatcatcaaggaggtggagagaaaaaacagatcacaaaaatttt
tttaaaattctatgtggcaattcacagacaacatacgttcagcacatttgtaaaaaaaat
taaaaggctaataataaatcgaccaagattcgaactacttgatgtacatattgatcacat
tgcgagtgcaacgcctcctcggcacctacttccggtaaaagagagcccgaaatatattaa
taaacgatggattccatcaactgactttacaagaaagccatggaacatggtcttggccct
tattgaactatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGTTTAACCTAATTGGCCTACAA 305 291 99 Antisense
GGAAATTTTCTAGTACCATCGAAAG 562 525 127 Antisense
GTTCAAACCTGAAAGTTCTCCAAGC 550 443 206 Antisense
GTGGCAATTCACAGACAACATACGT 561 491 292 Antisense
CAACATACGTTCAGCACATTTGTAA 445 189 307 Antisense
GATTCGAACTACTTGATGTACATAT 482 433 365 Antisense
TGTACATATTGATCACATTGCGAGT 91 559 381 Antisense
TCGGCACCTACTTCCGGTAAAAGAG 331 253 417 Antisense
GATGGATTCCATCAACTGACTTTAC 255 407 464 Antisense
CATGGAACATGGTCTTGGCCCTTAT 669 209 497 Antisense
GGTCTTGGCCCTTATTGAACTATAT 203 501 507 Antisense
Sequence Source Affymetrix Proprietary Database