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[177430_s_at]

Description T06G6.3 /REP_DB=WormBase Gene ID /WP=CE18216 /TR=O18051 /GB=CAB04708.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 14      4grp_total > 39      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 61.3
(3)
P 		49.6
(1.2)
A 		22.6
(-3)
A 		25.3
(-2.6)
A 		39
B 77.4
(3)
P 		7.7
(-3)
A 		23.9
(-1.6)
A 		44.5
(0.2)
A 		70
C 85.2
(3)
P 		19.7
(-2.6)
A 		15.2
(-3)
A 		54.2
(0.3)
A 		70
avr 74.6
(3) 		25.7
(-2.4) 		20.6
(-3) 		41.3
(-0.7) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 53.7
(1.4)
M 		62.2
(3)
P 		29.7
(-3)
A 		46.6
(0.1)
A 		30.2
(-2.9)
A 		31.2
(-2.7)
A 		33
B 65.8
(3)
P 		61.4
(2.5)
A 		40.5
(0.1)
A 		14.1
(-3)
A 		20.9
(-2.2)
A 		41.3
(0.2)
A 		52
C 69.8
(2.6)
P 		75.2
(3)
P 		18.9
(-1.6)
A 		68.8
(2.5)
A 		1.8
(-3)
A 		11.7
(-2.2)
A 		73
avr 63.1
(2.6) 		66.3
(3) 		29.7
(-1.5) 		43.2
(0.2) 		17.6
(-3) 		28.1
(-1.7) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 22.3
(3)
P 		10.8
(-0.7)
A 		5.9
(-2.3)
A 		3.7
(-3)
A 		19
B 24.7
(3)
P 		1.9
(-3)
A 		5.5
(-2.1)
A 		9.5
(-1)
A 		23
C 28.2
(3)
P 		5.7
(-2.9)
A 		5.3
(-3)
A 		9.1
(-2)
A 		23
avr 25.1
(3) 		6.1
(-2.8) 		5.6
(-3) 		7.4
(-2.4) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 9.9
(-1.7)
M 		22.1
(3)
P 		6.5
(-3)
A 		11.8
(-1)
A 		9.1
(-2)
A 		7.6
(-2.6)
A 		16
B 22.9
(3)
P 		20.4
(2.2)
A 		9.8
(-1.1)
A 		3.7
(-3)
A 		8.5
(-1.5)
A 		15.4
(0.7)
A 		19
C 25.9
(3)
P 		22.9
(2.3)
P 		4.8
(-2)
A 		13.8
(0.1)
A 		0.6
(-3)
A 		3.9
(-2.2)
A 		25
avr 19.6
(2.2) 		21.8
(3) 		7
(-2.7) 		9.8
(-1.6) 		6.1
(-3) 		9
(-1.9) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177430_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1866
Sequence Type Exemplar sequence
Representative Public ID T06G6.3 NCBI
Target Description T06G6.3 /REP_DB=WormBase Gene ID /WP=CE18216 /TR=O18051 /GB=CAB04708.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026444(11), NM_001026443(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026444 NCBI Caenorhabditis elegans T06G6.3b (T06G6.3) mRNA, complete cds. 11/11 None
NM_001026443 NCBI Caenorhabditis elegans T06G6.3a (T06G6.3) mRNA, complete cds. 11/11 None
SNAP00000021709 ENSEMBL cdna:SNAP chromosome:CEL140:I:12717187:12719717:-1 11/11 None
GENEFINDER00000021725 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12717187:12719717:-1 11/11 None
T06G6.3b ENSEMBL cdna:known chromosome:CEL140:I:12717048:12719717:-1 gene:T06G6.3 11/11 None
T06G6.3a ENSEMBL cdna:known chromosome:CEL140:I:12717187:12719717:-1 gene:T06G6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12717117-12719648(-) 100.0 100.0
Public Domain and Genome References
Ensembl T06G6.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH10780 Hypothetical protein T06G6.3b [Caenorhabditis elegans] ref|NP_001021615.1| T06G6.3b [Caenorhabditis elegans] 0.0
blast CAB04708 Hypothetical protein T06G6.3a [Caenorhabditis elegans] ref|NP_001021614.1| T06G6.3a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.1.1.Globins All alpha proteins; Globin-like; Globin-like; Globins 1.5
Sequence
Target Sequence 
>C. ELEGANS:177430_S_AT
aactggcgcagcagattttggaccaagcgcttgaattcaaggccagcaataaggcccggg
ccaaagagcatccagcatcaagcaagagcgaggaacagtcttcaaacaaggagatcctta
gcagcctggaggcaaagctcaaaaaggagcaggacgatcatttggtaacaaccaatcagc
tcaactatcaaagtgctatcctgaatgaagctcaatcggaaatcaagaagctcgaacagc
tcatcctcaaaaattccgaggagctggagagcttacagacctggaaatccgactcgacga
ttcgagagcaaaatcttatggacgagaattgcaagcagtatgtggatatatgcgatctcc
aaaacacaatcagaggactgcggtttgctgatacgcgctggatggaggaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTGGCGCAGCAGATTTTGGACCA 329 143 974 Antisense
TAAGGCCCGGGCCAAAGAGCATCCA 183 637 1023 Antisense
GAGCATCCAGCATCAAGCAAGAGCG 354 389 1039 Antisense
AAGGAGATCCTTAGCAGCCTGGAGG 16 161 1081 Antisense
GGAGCAGGACGATCATTTGGTAACA 193 519 1119 Antisense
GGTAACAACCAATCAGCTCAACTAT 335 503 1137 Antisense
AACAGCTCATCCTCAAAAATTCCGA 81 137 1208 Antisense
GAGCTGGAGAGCTTACAGACCTGGA 331 387 1234 Antisense
CAGACCTGGAAATCCGACTCGACGA 324 183 1249 Antisense
GGACTGCGGTTTGCTGATACGCGCT 89 525 1348 Antisense
GCTGATACGCGCTGGATGGAGGAAC 218 295 1360 Antisense
Sequence Source Affymetrix Proprietary Database