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[177428_at]

Description F58G6.3 /REP_DB=WormBase Gene ID /WP=CE03430 /TR=Q21009 /GB=CAA92470.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 41      6grp_highest_nonorm > 52      6grp_total > 31      4grp_total > 58      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1556
1 2 3 4 range
A 323.9
(-2)
P 		1428.4
(2.4)
P 		1583.4
(3)
P 		78.4
(-3)
A 		1505
B 315
(-1.8)
P 		1354.1
(2.6)
P 		1438
(3)
P 		27.9
(-3)
A 		1410
C 294.6
(-2.4)
P 		1579.2
(3)
P 		1440.2
(2.4)
P 		138.6
(-3)
M 		1441
avr 311.2
(-2) 		1453.9
(2.9) 		1487.2
(3) 		81.6
(-3) 		1406

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 977
1 2 3 4 5 6 range
A 709
(0.2)
P 		715
(0.3)
P 		1152.2
(3)
P 		784.1
(0.7)
P 		434.9
(-1.5)
P 		194.5
(-3)
P 		958
B 582.2
(-0)
P 		906.8
(2.7)
P 		938.3
(3)
P 		824.8
(2)
P 		458.5
(-1)
P 		226.6
(-3)
P 		712
C 582.9
(0.2)
P 		935.9
(3)
P 		895.6
(2.7)
P 		729.4
(1.4)
P 		300.7
(-2)
P 		175.1
(-3)
P 		761
avr 624.7
(0.2) 		852.6
(1.9) 		995.4
(3) 		779.4
(1.4) 		398
(-1.5) 		198.7
(-3) 		797
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 496
1 2 3 4 range
A 117.9
(-1.4)
P 		310.1
(1.5)
P 		413.9
(3)
P 		11.5
(-3)
A 		402
B 100.5
(-1.3)
P 		334.4
(3)
P 		333.2
(3)
P 		5.9
(-3)
A 		329
C 97.5
(-2.1)
P 		454
(2.4)
P 		502
(3)
P 		23.4
(-3)
M 		479
avr 105.3
(-1.6) 		366.2
(2.3) 		416.4
(3) 		13.6
(-3) 		403

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 254
1 2 3 4 5 6 range
A 130.7
(-0.6)
P 		254.3
(3)
P 		250.9
(2.9)
P 		198.9
(1.4)
P 		131.2
(-0.6)
P 		47.4
(-3)
P 		207
B 202.6
(0.3)
P 		301.8
(3)
P 		227.9
(1)
P 		218.5
(0.7)
P 		186.3
(-0.2)
P 		84.5
(-3)
P 		217
C 216
(1.2)
P 		285.6
(3)
P 		228
(1.5)
P 		146.7
(-0.7)
P 		97.3
(-2)
P 		58.6
(-3)
P 		227
avr 183.1
(0.3) 		280.6
(3) 		235.6
(1.8) 		188
(0.4) 		138.3
(-0.9) 		63.5
(-3) 		217
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177428_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9709
Sequence Type Exemplar sequence
Representative Public ID F58G6.3 NCBI
Target Description F58G6.3 /REP_DB=WormBase Gene ID /WP=CE03430 /TR=Q21009 /GB=CAA92470.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069313, NM_069312
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000020771 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9649194:9655272:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_069312 4/11 Cross Hyb Matching Probes None
NM_069313 7/11 Cross Hyb Matching Probes None
SNAP00000020768 6/11 Cross Hyb Matching Probes None
F58G6.3 4/11 Cross Hyb Matching Probes None
F58G6.7 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9653528-9655278(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92469 Hypothetical protein F58G6.2 [Caenorhabditis elegans] ref|NP_501712.2| Serpentine Receptor, class M family member (srm-3) [Caenorhabditis elegans] 1.0E-150
blast CAE72802 Hypothetical protein CBG20079 [Caenorhabditis briggsae] 7.0E-85
blast AAK18970 Hypothetical protein K12C11.3 [Caenorhabditis elegans] ref|NP_490841.2| K12C11.3 [Caenorhabditis elegans] 3.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR007274 EMBL-EBI Ctr copper transporter 6.2E-42
Pfam IPR007274 EMBL-EBI Ctr copper transporter 1.1E-53
Pfam IPR007274 EMBL-EBI Ctr copper transporter 1.1E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000020771 11 61-83,98-120,166-188,213-235,247-266,342-364,414-436,472-494,514-536,546-568,656-678
Sequence
Target Sequence 
>C. ELEGANS:177428_AT
aaaagaaagctacatttcccgcctgctctccacaatgcacttttttcaaacattcttatt
ttttgttcaactcggtttcagttattgtcttatgctcattttcatgacgttttcaatttg
gttgggattagctgttgttattggcttgtctattggatttttaatttttggaggaaggaa
agctttgaaatttggaagaacaaaactctctccaaaagttaagattgtggaaaagaaagt
agattgctgctgttcaacagaaaaagatggattatggaatattccagaaacaattccttt
gacacaaaaaactgtcactttggcaccattcacccgtgactccttaatttcaaaatttca
catggcttcttcacttcttgtatttgtgcaacatttcattgattactctcttatgctggt
ttcaatgacttacaattggccaatatttctctccttgcttgcaggtcataccaccggata
tttcttcctaggacccatgatgactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAGAAAGCTACATTTCCCGCCTG 695 127 231 Antisense
TGCTCTCCACAATGCACTTTTTTCA 583 581 254 Antisense
GGTTTCAGTTATTGTCTTATGCTCA 68 507 304 Antisense
GTTGTTATTGGCTTGTCTATTGGAT 448 437 364 Antisense
AAACTGTCACTTTGGCACCATTCAC 598 127 539 Antisense
TCACCCGTGACTCCTTAATTTCAAA 600 593 560 Antisense
AAATTTCACATGGCTTCTTCACTTC 691 115 583 Antisense
GATTACTCTCTTATGCTGGTTTCAA 213 429 631 Antisense
ACAATTGGCCAATATTTCTCTCCTT 689 113 662 Antisense
GTCATACCACCGGATATTTCTTCCT 613 467 695 Antisense
TTCTTCCTAGGACCCATGATGACTG 364 689 712 Antisense
Sequence Source Affymetrix Proprietary Database