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[177427_at]

Description C29F7.6 /REP_DB=WormBase Gene ID /WP=CE08447 /TR=O17619 /GB=CAB07325.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 16.6
(-2.5)
A 		3.8
(-3)
A 		3.1
(-3)
A 		166.6
(3)
A 		164
B 12.5
(-0.5)
A 		3.2
(-3)
A 		4.5
(-2.6)
A 		25.3
(3)
A 		22
C 9.8
(-0.9)
A 		10.4
(-0.4)
A 		6.9
(-3)
A 		15
(3)
A 		8
avr 13
(-2.2) 		5.8
(-2.9) 		4.8
(-3) 		69
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 29.7
(3)
A 		7.3
(-2)
A 		18
(0.4)
A 		12.5
(-0.9)
A 		3
(-3)
A 		2.9
(-3)
A 		27
B 14
(-1.5)
A 		28.7
(0.4)
A 		2.5
(-3)
A 		3
(-2.9)
A 		47.4
(2.8)
A 		48.7
(3)
A 		46
C 5.4
(-2.5)
A 		36.7
(3)
A 		8.3
(-2)
A 		13
(-1.2)
A 		2.5
(-3)
A 		30.6
(1.9)
A 		34
avr 16.4
(-0.7) 		24.2
(1.9) 		9.6
(-3) 		9.5
(-3) 		17.6
(-0.3) 		27.4
(3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 6
(-1.7)
A 		0.8
(-3)
A 		0.8
(-3)
A 		24.4
(3)
A 		24
B 4
(1.2)
A 		0.8
(-3)
A 		1
(-2.7)
A 		5.4
(3)
A 		5
C 3.2
(3)
A 		3
(1.5)
A 		2.4
(-3)
A 		2.5
(-2.3)
A 		1
avr 4.4
(-1.1) 		1.5
(-2.9) 		1.4
(-3) 		10.8
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 5.5
(3)
A 		2.6
(-0.6)
A 		3.9
(1)
A 		3.2
(0.1)
A 		0.9
(-2.8)
A 		0.7
(-3)
A 		5
B 4.9
(-1.6)
A 		9.6
(-0.1)
A 		0.6
(-3)
A 		0.8
(-2.9)
A 		19.3
(3)
A 		18.1
(2.6)
A 		19
C 2
(-2.3)
A 		11.2
(3)
A 		2.1
(-2.3)
A 		2.6
(-2)
A 		0.8
(-3)
A 		10.2
(2.4)
A 		10
avr 4.1
(-1.5) 		7.8
(1.5) 		2.2
(-3) 		2.2
(-3) 		7
(0.8) 		9.7
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177427_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17999
Sequence Type Exemplar sequence
Representative Public ID C29F7.6 NCBI
Target Description C29F7.6 /REP_DB=WormBase Gene ID /WP=CE08447 /TR=O17619 /GB=CAB07325.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077838(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077838 NCBI Caenorhabditis elegans C29F7.6 (C29F7.6) mRNA, complete cds. 11/11 None
SNAP00000036552 ENSEMBL cdna:SNAP chromosome:CEL140:X:13436375:13441041:1 11/11 None
GENEFINDER00000036555 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13436375:13441041:1 11/11 None
C29F7.6 ENSEMBL cdna:known chromosome:CEL140:X:13436375:13441804:1 gene:C29F7.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13436374-13440932(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C29F7.6
Entrez Gene 181467 Entrez gene
SwissProt O17619 EMBL-EBI
WormBase CE08447 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07325 Hypothetical protein C29F7.6 [Caenorhabditis elegans] ref|NP_510239.1| C29F7.6 [Caenorhabditis elegans] 0.0
blast CAA94916 Hypothetical protein F23D12.5 [Caenorhabditis elegans] ref|NP_510405.1| F23D12.5 [Caenorhabditis elegans] 6.0E-83
blast CAA94916 Hypothetical protein F23D12.5 [Caenorhabditis elegans] ref|NP_510405.1| F23D12.5 [Caenorhabditis elegans] 2.0E-80
blast CAE69850 Hypothetical protein CBG16178 [Caenorhabditis briggsae] 3.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR003347 EMBL-EBI Transcription factor jumonji, jmjC 1.5E-46
Sequence
Target Sequence 
>C. ELEGANS:177427_AT
aagagcttctaaactggggcatcccggttatgaaattcattcaagaaacagatgatacag
tctacgttggcacaggaacctatcactgggtccaatctattggatttactggaaatgtgt
cgtggaacattgcagaatcaacgttcgatcagtttgctatggctgctctggtccatgatc
acaatactgaacagagctatgattctgtgcttccgattattccaatggcatgggaaatgg
caaagaagcgggcgttccttggaacagaaatgtacccactaatcaagtcaattctagcca
gatcacttgcaaaatcaactttcgagttggacaaagctaaatccgctggagccaaaattt
ccaacatcgaagatgcttcggtggagctgagccatgtggaacgttgccagggtaaaaaat
gtaaacgggacgtgctcttcaacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAGCTTCTAAACTGGGGCATCCC 259 153 1697 Antisense
GATGATACAGTCTACGTTGGCACAG 314 411 1747 Antisense
GGCACAGGAACCTATCACTGGGTCC 412 535 1765 Antisense
GATCAGTTTGCTATGGCTGCTCTGG 281 421 1843 Antisense
GCTGCTCTGGTCCATGATCACAATA 348 297 1858 Antisense
TGATTCTGTGCTTCCGATTATTCCA 121 565 1896 Antisense
GCAAAGAAGCGGGCGTTCCTTGGAA 415 317 1936 Antisense
GTCAATTCTAGCCAGATCACTTGCA 462 463 1983 Antisense
GATGCTTCGGTGGAGCTGAGCCATG 236 413 2068 Antisense
GAGCCATGTGGAACGTTGCCAGGGT 57 385 2085 Antisense
GTAAACGGGACGTGCTCTTCAACAC 658 455 2117 Antisense
Sequence Source Affymetrix Proprietary Database