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[177426_at]

Description W10G6.1 /REP_DB=WormBase Gene ID /WP=CE14796 /TR=Q94364 /GB=CAB03484.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 34      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 3.3
(-3)
A 		3.9
(-2)
A 		6.9
(3)
A 		3.3
(-3)
A 		4
B 3.6
(-1.6)
A 		10.4
(3)
A 		5.5
(-0.3)
A 		1.6
(-3)
A 		9
C 1.4
(-2.7)
A 		6.3
(-0.6)
A 		0.7
(-3)
A 		14.8
(3)
A 		14
avr 2.8
(-3) 		6.9
(3) 		4.4
(-0.7) 		6.6
(2.6) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 4.2
(1.8)
A 		1.8
(-2.5)
A 		4.9
(3)
A 		1.5
(-3)
A 		2.8
(-0.7)
A 		4.9
(3)
A 		3
B 0.7
(-3)
A 		2.7
(0.1)
A 		2.7
(0.1)
A 		3.2
(0.8)
A 		2.1
(-0.8)
A 		4.6
(3)
A 		4
C 2
(-2.4)
A 		10.2
(2.1)
A 		1.5
(-2.7)
A 		11.9
(3)
A 		7.6
(0.6)
A 		1
(-3)
A 		11
avr 2.3
(-3) 		4.9
(1.9) 		3
(-1.7) 		5.5
(3) 		4.2
(0.6) 		3.5
(-0.8) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.2
(0.2)
A 		0.8
(-1.6)
A 		1.8
(3)
A 		0.5
(-3)
A 		1
B 1.1
(-0.9)
A 		2.6
(3)
A 		1.3
(-0.4)
A 		0.3
(-3)
A 		2
C 0.5
(-2.5)
A 		1.8
(1.1)
A 		0.3
(-3)
A 		2.5
(3)
A 		2
avr 0.9
(-3) 		1.7
(3) 		1.1
(-1.5) 		1.1
(-1.5) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.8
(0)
A 		0.6
(-1.5)
A 		1.1
(2.3)
A 		0.4
(-3)
A 		0.8
(0)
A 		1.2
(3)
A 		1
B 0.3
(-3)
A 		0.9
(-0.4)
A 		0.7
(-1.3)
A 		0.9
(-0.4)
A 		0.9
(-0.4)
A 		1.7
(3)
A 		1
C 0.7
(-2.1)
A 		3.1
(3)
A 		0.4
(-2.8)
A 		2.4
(1.5)
A 		2.5
(1.7)
A 		0.3
(-3)
A 		3
avr 0.6
(-3) 		1.5
(3) 		0.7
(-2.3) 		1.2
(1) 		1.4
(2.3) 		1.1
(0.3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177426_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18037
Sequence Type Exemplar sequence
Representative Public ID W10G6.1 NCBI
Target Description W10G6.1 /REP_DB=WormBase Gene ID /WP=CE14796 /TR=Q94364 /GB=CAB03484.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078245(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078245 NCBI Caenorhabditis elegans W10G6.1 (W10G6.1) mRNA, complete cds. 11/11 None
GENEFINDER00000020047 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16245107:16245498:1 9/11 None
W10G6.1 ENSEMBL cdna:known chromosome:CEL140:X:16245107:16245472:1 gene:W10G6.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020040 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16245106-16245472(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W10G6.1
Entrez Gene 189335 Entrez gene
SwissProt Q94364 EMBL-EBI
WormBase CE14796 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03484 Hypothetical protein W10G6.1 [Caenorhabditis elegans] ref|NP_510646.1| W10G6.1 [Caenorhabditis elegans] 6.0E-43
blast CAB03484 Hypothetical protein W10G6.1 [Caenorhabditis elegans] ref|NP_510646.1| W10G6.1 [Caenorhabditis elegans] 1.0E-32
blast AAA50664 Hypothetical protein C18H2.1 [Caenorhabditis elegans] ref|NP_498674.2| C18H2.1 [Caenorhabditis elegans] 6.0E-11
Sequence
Target Sequence 
>C. ELEGANS:177426_AT
acaccagcccgtaaaactcagaaaggaggccgaaagcgacgtgtcaatggagtggaggag
gaaattctgtacatcatcggattcttccaggacgactcgtcaattggtctatcaacgttc
ttcacaaaattctgcatattgtaccaggattcgaagagcaatttccgagtgctgaatttg
gagatgttttctcccgaaaacttgaatgcacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACCAGCCCGTAAAACTCAGAAAG 470 109 19 Antisense
GGAGGCCGAAAGCGACGTGTCAATG 169 515 43 Antisense
GGAAATTCTGTACATCATCGGATTC 173 527 78 Antisense
ATCGGATTCTTCCAGGACGACTCGT 366 35 94 Antisense
GGACGACTCGTCAATTGGTCTATCA 57 525 108 Antisense
TGGTCTATCAACGTTCTTCACAAAA 16 553 123 Antisense
AATTCTGCATATTGTACCAGGATTC 198 177 146 Antisense
TGTACCAGGATTCGAAGAGCAATTT 511 559 158 Antisense
GAGCAATTTCCGAGTGCTGAATTTG 325 391 174 Antisense
GGAGATGTTTTCTCCCGAAAACTTG 235 511 198 Antisense
TTTCTCCCGAAAACTTGAATGCACG 432 669 206 Antisense
Sequence Source Affymetrix Proprietary Database