[Home] | [Total List]

[177425_at]

Description ZC53.2 /REP_DB=WormBase Gene ID /WP=CE07584 /TR=Q23374 /GB=AAB52617.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 37      4grp_total > 09      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 6.5
(-2.7)
A 		2.6
(-3)
A 		7.2
(-2.6)
A 		76.1
(3)
P 		74
B 4.8
(-3)
A 		12.7
(-1.1)
A 		18.1
(0.2)
A 		29.9
(3)
A 		25
C 2.5
(-3)
A 		6.2
(3)
A 		3.5
(-1.4)
A 		5.7
(2.2)
A 		4
avr 4.6
(-3) 		7.2
(-2.5) 		9.6
(-2.1) 		37.2
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 2.5
(-2.6)
A 		2.6
(-2.5)
A 		2.2
(-3)
A 		2.4
(-2.7)
A 		6.7
(3)
A 		3.5
(-1.3)
A 		5
B 15
(0.8)
A 		22.6
(3)
A 		4.9
(-2.2)
A 		2.1
(-3)
A 		2.6
(-2.9)
A 		7.2
(-1.5)
A 		21
C 3.8
(-1.9)
A 		2.5
(-2.6)
A 		1.7
(-3)
A 		2.5
(-2.6)
A 		2
(-2.8)
A 		12.7
(3)
A 		11
avr 7.1
(1.2) 		9.2
(3) 		2.9
(-2.5) 		2.3
(-3) 		3.8
(-1.7) 		7.8
(1.8) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.4
(-2)
A 		0.6
(-3)
A 		1.9
(-2.3)
A 		11.1
(3)
P 		11
B 1.5
(-3)
A 		3.1
(-1)
A 		4.2
(0.3)
A 		6.4
(3)
A 		5
C 0.8
(-3)
A 		1.8
(3)
A 		1.2
(-0.6)
A 		1
(-1.8)
A 		1
avr 1.6
(-3) 		1.8
(-2.7) 		2.4
(-2) 		6.2
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.5
(-3)
A 		0.9
(-1.4)
A 		0.5
(-3)
A 		0.6
(-2.6)
A 		2
(3)
A 		0.8
(-1.8)
A 		2
B 5.2
(1)
A 		7.5
(3)
A 		1.2
(-2.5)
A 		0.6
(-3)
A 		1.1
(-2.6)
A 		2.7
(-1.2)
A 		7
C 1.4
(-1.4)
A 		0.8
(-2.4)
A 		0.4
(-3)
A 		0.5
(-2.8)
A 		0.6
(-2.7)
A 		4.2
(3)
A 		4
avr 2.4
(1.3) 		3.1
(3) 		0.7
(-2.8) 		0.6
(-3) 		1.2
(-1.6) 		2.6
(1.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177425_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18567
Sequence Type Exemplar sequence
Representative Public ID ZC53.2 NCBI
Target Description ZC53.2 /REP_DB=WormBase Gene ID /WP=CE07584 /TR=Q23374 /GB=AAB52617.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075951(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075951 NCBI Caenorhabditis elegans ZC53.2 (ZC53.2) mRNA, complete cds. 11/11 None
GENEFINDER00000010012 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1921704:1928654:-1 11/11 None
SNAP00000010002 ENSEMBL cdna:SNAP chromosome:CEL140:X:1923717:1924232:-1 11/11 None
ZC53.2 ENSEMBL cdna:known chromosome:CEL140:X:1923717:1924232:-1 gene:ZC53.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1923716-1924232(-) 96.12 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC53.2
Entrez Gene 191067 Entrez gene
SwissProt Q23374 EMBL-EBI
WormBase CE07584 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60722 Hypothetical protein Y49F6A.4 [Caenorhabditis elegans] 1.0E-161
blast T19261 hypothetical protein C14A6.4 - Caenorhabditis elegans 1.0E-161
blast T20782 hypothetical protein F11D11.9 - Caenorhabditis elegans 1.0E-161
blast AAB52617 Hypothetical protein ZC53.2 [Caenorhabditis elegans] ref|NP_508352.1| ZC53.2 [Caenorhabditis elegans] 1.0E-84
blast CAE73783 Hypothetical protein CBG21332 [Caenorhabditis briggsae] 3.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR001888 EMBL-EBI Transposase, type 1 2.8E-41
Sequence
Target Sequence 
>C. ELEGANS:177425_AT
acgcgttggtcgtttggtcaatgcggcaatcatggcaatcaccgaggcatctgggcttac
gctcaacattgattcgggattgttggagatgagcgacgttcgggaggacgtcattcgggt
gaaagcggatgtggacggctcgttggagtgtctgtcgacagcaagaagtgatcagacgaa
ttacatccaaatggaaatttatatagctacaatcacgggaatagtcatggatatgaagta
cagaggtgtagacattgacatgcctgccacatacttgagagtagttgataagttcccgaa
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGCGTTGGTCGTTTGGTCAATGCG 231 91 42 Antisense
ATGCGGCAATCATGGCAATCACCGA 498 41 62 Antisense
CAATCACCGAGGCATCTGGGCTTAC 675 179 77 Antisense
TCTGGGCTTACGCTCAACATTGATT 625 607 91 Antisense
GAGATGAGCGACGTTCGGGAGGACG 363 395 127 Antisense
GGGAGGACGTCATTCGGGTGAAAGC 602 493 143 Antisense
AAAGCGGATGTGGACGGCTCGTTGG 47 125 163 Antisense
GCTCGTTGGAGTGTCTGTCGACAGC 60 299 179 Antisense
GGTGTAGACATTGACATGCCTGCCA 131 499 286 Antisense
ACATGCCTGCCACATACTTGAGAGT 273 105 299 Antisense
GAGAGTAGTTGATAAGTTCCCGAAA 250 395 318 Antisense
Sequence Source Affymetrix Proprietary Database