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[177424_at]

Description T01E8.1 /REP_DB=WormBase Gene ID /WP=CE02305 /TR=Q21768 /GB=CAA88748.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 18      4grp_highest_8_8 > 54      4grp_high_8_8 > 09      6grp_highest_nonorm > 40      6grp_total > 18      4grp_total > 22      6grp_highest_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 881
1 2 3 4 range
A 1264.1
(3)
P 		461.7
(-3)
P 		549.8
(-2.3)
P 		915.6
(0.4)
P 		802
B 962.9
(0.6)
P 		772
(-0.7)
P 		435.9
(-3)
P 		1316.9
(3)
P 		881
C 1141.3
(3)
P 		705.5
(-1.6)
P 		576.9
(-3)
P 		937.4
(0.8)
P 		564
avr 1122.8
(3) 		646.4
(-1.7) 		520.9
(-3) 		1056.6
(2.3) 		602

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 605
1 2 3 4 5 6 range
A 853.9
(3)
P 		626.4
(0.1)
P 		386.8
(-3)
P 		517.7
(-1.3)
P 		587.1
(-0.4)
P 		549.7
(-0.9)
P 		467
B 971.8
(3)
P 		621.5
(-0.6)
P 		382
(-3)
P 		555.4
(-1.2)
P 		485.7
(-1.9)
P 		535
(-1.4)
P 		590
C 986.9
(3)
P 		623.4
(-1.4)
P 		569.8
(-2.1)
P 		583.3
(-1.9)
P 		495.3
(-3)
P 		532.9
(-2.5)
P 		492
avr 937.5
(3) 		623.8
(-0.8) 		446.2
(-3) 		552.1
(-1.7) 		522.7
(-2.1) 		539.2
(-1.9) 		491
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 360
1 2 3 4 range
A 460.3
(3)
P 		100.2
(-3)
P 		143.7
(-2.3)
P 		134
(-2.4)
P 		360
B 307.1
(3)
P 		190.7
(-0.4)
P 		101
(-3)
P 		280.6
(2.2)
P 		206
C 377.8
(3)
P 		202.8
(-1.8)
P 		201.1
(-1.8)
P 		158.1
(-3)
P 		220
avr 381.7
(3) 		164.6
(-2.6) 		148.6
(-3) 		190.9
(-1.9) 		233

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 282
1 2 3 4 5 6 range
A 157.4
(0.2)
P 		222.8
(3)
P 		84.2
(-3)
P 		131.3
(-1)
P 		177.2
(1)
P 		133.8
(-0.9)
P 		139
B 338.1
(3)
P 		206.9
(-0.2)
P 		92.8
(-3)
P 		147.1
(-1.7)
P 		197.3
(-0.4)
P 		199.5
(-0.4)
P 		245
C 365.8
(3)
P 		190.2
(-1.2)
P 		145
(-2.3)
P 		117.3
(-3)
P 		160.3
(-2)
P 		178.4
(-1.5)
P 		249
avr 287.1
(3) 		206.6
(0.3) 		107.3
(-3) 		131.9
(-2.2) 		178.3
(-0.6) 		170.6
(-0.9) 		180
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177424_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3259
Sequence Type Exemplar sequence
Representative Public ID T01E8.1 NCBI
Target Description T01E8.1 /REP_DB=WormBase Gene ID /WP=CE02305 /TR=Q21768 /GB=CAA88748.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063802(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063802 NCBI Caenorhabditis elegans T01E8.1 (T01E8.1) mRNA, complete cds. 11/11 None
SNAP00000042897 ENSEMBL cdna:SNAP chromosome:CEL140:II:10207807:10209002:1 11/11 None
GENEFINDER00000042910 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10207807:10209002:1 11/11 None
T01E8.1.1 ENSEMBL cdna:known chromosome:CEL140:II:10206625:10209301:1 gene:T01E8.1 11/11 None
T01E8.1.2 ENSEMBL cdna:known chromosome:CEL140:II:10206635:10209301:1 gene:T01E8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10206682-10209298(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T01E8.1
Entrez Gene 174584 Entrez gene
SwissProt Q21768 EMBL-EBI
WormBase CE32922 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88748 Hypothetical protein T01E8.1 [Caenorhabditis elegans] emb|CAA88732.2| Hypothetical protein T01E8.1 [Caenorhabditis elegans] ref|NP_496203.2| T01E8.1 [Caenorhabditis elegans] 0.0
blast CAE57859 Hypothetical protein CBG00897 [Caenorhabditis briggsae] 0.0
blast CAE57859 Hypothetical protein CBG00897 [Caenorhabditis briggsae] 1.0E-167
Sequence
Target Sequence 
>C. ELEGANS:177424_AT
aagcttcaaatatcagttccacgtcttttcgatgaacctctgaaacttgtcacagaatac
cttccaaatctaactcacctttctcttgaaatcaatcatctcaataccaatattctccaa
aaatattttgccggtggctcaaaatcgaatgcttcaaagttgaaatgtttgaagatttgt
cgaatgagaatgacatatcgagttctttttgcaattgctcgtggagctcgtaatctcact
gatcttgaaacttcacatatgtccagcgttgatgatcgatttttatgtcttttgggtgga
aattgccgacaattaagatgtttgaatattaatggatgcagaatggtcagcgataaagga
ctggcggttttggcaaaacgttgccctctccgtgaagtccgaatccgtggcaccgcctgc
actgacaagtccatctatacactggcacaattctgtccagagctcgaatggatctcatat
gccgactattcaggtcgtccaaaattctccgatgctgcacttcaatgtcttcgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCTTCAAATATCAGTTCCACGTC 597 149 1048 Antisense
GTTCCACGTCTTTTCGATGAACCTC 665 439 1063 Antisense
GAATACCTTCCAAATCTAACTCACC 697 325 1102 Antisense
ATCTAACTCACCTTTCTCTTGAAAT 183 33 1115 Antisense
GGAGCTCGTAATCTCACTGATCTTG 308 521 1270 Antisense
TCTCCGTGAAGTCCGAATCCGTGGC 77 609 1434 Antisense
GCCTGCACTGACAAGTCCATCTATA 129 283 1462 Antisense
GGCACAATTCTGTCCAGAGCTCGAA 304 535 1491 Antisense
ATGGATCTCATATGCCGACTATTCA 586 51 1515 Antisense
GTCGTCCAAAATTCTCCGATGCTGC 657 471 1541 Antisense
GATGCTGCACTTCAATGTCTTCGTG 76 413 1558 Antisense
Sequence Source Affymetrix Proprietary Database