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[177423_at]

Description ZC53.7 /REP_DB=WormBase Gene ID /WP=CE07589 /TR=Q23376 /GB=AAB52620.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 08      6grp_cgc > 59      6grp_cgc_sub > Da      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 1.1
(-3)
A 		10
(3)
A 		5.6
(0)
A 		6.2
(0.4)
A 		9
B 3.2
(-3)
A 		5
(-2.6)
A 		3.3
(-3)
A 		29.7
(3)
A 		27
C 9.7
(-0.8)
A 		3.5
(-3)
A 		18
(2.1)
A 		20.7
(3)
A 		17
avr 4.7
(-3) 		6.2
(-2.4) 		9
(-1.2) 		18.9
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 9
(-2.6)
A 		2.2
(-3)
A 		4.1
(-2.9)
A 		4.1
(-2.9)
A 		35.4
(-0.9)
A 		96.1
(3)
P 		94
B 23.6
(-1.3)
A 		1
(-3)
A 		2.7
(-2.9)
A 		1.1
(-3)
A 		44.8
(0.3)
A 		80.2
(3)
P 		79
C 1.7
(-3)
A 		17
(-2)
A 		1.7
(-3)
A 		6.1
(-2.7)
A 		62.6
(0.9)
A 		95.6
(3)
P 		94
avr 11.4
(-2.4) 		6.7
(-2.7) 		2.8
(-3) 		3.8
(-2.9) 		47.6
(0.1) 		90.6
(3) 		88
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.4
(-3)
A 		2.2
(3)
A 		1.5
(0.7)
A 		0.9
(-1.3)
A 		2
B 1
(-2.8)
A 		1.2
(-2.6)
A 		0.8
(-3)
A 		6.3
(3)
A 		6
C 3.2
(-0.5)
A 		1
(-3)
A 		6.3
(3)
A 		3.5
(-0.2)
A 		5
avr 1.5
(-3) 		1.5
(-3) 		2.9
(1) 		3.6
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 1.7
(-2.8)
A 		0.8
(-3)
A 		0.9
(-3)
A 		1
(-2.9)
A 		10.7
(-0.4)
A 		23.4
(3)
P 		23
B 8.2
(-1.4)
A 		0.3
(-3)
A 		0.6
(-2.9)
A 		0.3
(-3)
A 		18.2
(0.6)
A 		29.9
(3)
P 		30
C 0.6
(-3)
A 		5.2
(-2.1)
A 		0.4
(-3)
A 		1.2
(-2.8)
A 		20.2
(0.8)
A 		32
(3)
P 		32
avr 3.5
(-2.4) 		2.1
(-2.7) 		0.6
(-3) 		0.8
(-3) 		16.4
(0.4) 		28.4
(3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177423_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18347
Sequence Type Exemplar sequence
Representative Public ID ZC53.7 NCBI
Target Description ZC53.7 /REP_DB=WormBase Gene ID /WP=CE07589 /TR=Q23376 /GB=AAB52620.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075949(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075949 NCBI Caenorhabditis elegans Regulator of G protein Signaling family member (rgs-9) (rgs-9) mRNA, complete cds. 11/11 None
SNAP00000010000 ENSEMBL cdna:SNAP chromosome:CEL140:X:1915308:1916646:1 10/11 None
GENEFINDER00000010011 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1915308:1916919:1 11/11 None
ZC53.7 ENSEMBL cdna:known chromosome:CEL140:X:1915279:1917047:1 gene:ZC53.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1915307-1916919(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol rgs-9
Ensembl ZC53.7
Entrez Gene 180506 Entrez gene
SwissProt Q23376 EMBL-EBI
WormBase CE07589 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4871 signal transducer activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52620 Regulator of g protein signaling protein 9 [Caenorhabditis elegans] ref|NP_508350.1| Regulator of G protein Signaling family member (rgs-9) [Caenorhabditis elegans] 1.0E-136
blast AAB52620 Regulator of g protein signaling protein 9 [Caenorhabditis elegans] ref|NP_508350.1| Regulator of G protein Signaling family member (rgs-9) [Caenorhabditis elegans] 1.0E-122
blast AAK39348 Regulator of g protein signaling protein 8.2 [Caenorhabditis elegans] gb|AAC78153.1| Regulator of g protein signaling protein 8.1 [Caenorhabditis elegans] ref|NP_508356.1| Regulator of G protein Signaling family member (rgs-8.2) [Caenorhabditis elegans] ref|NP_508359.1| Regulator of G protein Signaling family member (rgs-8.1) [Caenorhabditis elegans] 7.0E-65
blast AAK39348 Regulator of g protein signaling protein 8.2 [Caenorhabditis elegans] gb|AAC78153.1| Regulator of g protein signaling protein 8.1 [Caenorhabditis elegans] ref|NP_508356.1| Regulator of G protein Signaling family member (rgs-8.2) [Caenorhabditis elegans] ref|NP_508359.1| Regulator of G protein Signaling family member (rgs-8.1) [Caenorhabditis elegans] 2.0E-55
blast CAB05728 Hypothetical protein F45B8.1 [Caenorhabditis elegans] ref|NP_510483.1| Regulator of G protein Signaling family member (rgs-11) [Caenorhabditis elegans] 4.0E-31
Sequence
Target Sequence 
>C. ELEGANS:177423_AT
gcactgcgtggtttctcaacatgatcggcacaagacaaagagtgtcttagttattctgtt
tctcatcgcaatgagaaatatcaagaataaccgaggtacatttacccgtatcaaggatag
gctgagctctgcactgaaatcaccggcttcactcttccgccgctctccggaaatctcact
tcgagaggatattctcagttggaagaaatcgccgcactctcttgccgccagcgaatacgg
cggcagtgatctcttggttcaatttctgaaacagcagacttcggatgactacgtcgactt
ttggctggaaagcggcgagtacaggtggacaagaacgaaaccggggcgtaaacgggacat
cgaagctcaacggatttatgacaagttcgtgtacggggaatgcccaagaaagattgctca
tcttgagaaaatgtgttttgtgtcgcgtcaaggaccaacaggaagagacgtgttcatctg
tgctcaggcgtatgttggaaccaactttccaaaggattcgtacaagaaatttctccaaga
tccaatctacttgaacctcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACTGCGTGGTTTCTCAACATGAT 44 317 120 Antisense
AGTGTCTTAGTTATTCTGTTTCTCA 201 59 160 Antisense
GGCTGAGCTCTGCACTGAAATCACC 186 539 239 Antisense
GCTCTCCGGAAATCTCACTTCGAGA 390 299 281 Antisense
GAATACGGCGGCAGTGATCTCTTGG 457 325 352 Antisense
AACAGCAGACTTCGGATGACTACGT 660 135 389 Antisense
ATGACTACGTCGACTTTTGGCTGGA 148 45 404 Antisense
GTTTTGTGTCGCGTCAAGGACCAAC 100 449 554 Antisense
GGAAGAGACGTGTTCATCTGTGCTC 367 531 580 Antisense
ATCTGTGCTCAGGCGTATGTTGGAA 477 33 595 Antisense
AGATCCAATCTACTTGAACCTCCTC 645 65 657 Antisense
Sequence Source Affymetrix Proprietary Database